Construct: ORF ccsbBroadEn_00241
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009230.1_s300c1, BRDN0000398292
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCT6A (908)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 908 | CCT6A | chaperonin containing TCP1 ... | NM_001762.4 | 100% | 100% | |
| 2 | human | 908 | CCT6A | chaperonin containing TCP1 ... | NM_001009186.2 | 91.5% | 91.5% | 201_202ins135 |
| 3 | human | 10693 | CCT6B | chaperonin containing TCP1 ... | NM_006584.4 | 80.5% | 85.6% | (many diffs) |
| 4 | human | 10693 | CCT6B | chaperonin containing TCP1 ... | NM_001193529.3 | 75.3% | 79.2% | (many diffs) |
| 5 | human | 643253 | CCT6P1 | chaperonin containing TCP1 ... | NR_003110.2 | 67% | (many diffs) | |
| 6 | human | 643180 | CCT6P3 | chaperonin containing TCP1 ... | NR_033416.1 | 47.8% | (many diffs) | |
| 7 | mouse | 12466 | Cct6a | chaperonin containing Tcp1,... | NM_009838.2 | 88.7% | 96.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1662
- ORF length:
- 1593
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGGCGGTG AAGACCCTGA ACCCCAAGGC CGAGGTGGCC CGAGCGCAGG 121 CGGCGCTGGC GGTCAACATC AGCGCAGCGC GGGGTCTGCA GGACGTGCTA AGGACCAACC 181 TGGGGCCCAA GGGCACCATG AAGATGCTCG TTTCTGGCGC TGGAGACATC AAACTTACTA 241 AAGACGGCAA TGTGCTGCTT CACGAAATGC AAATTCAACA CCCAACAGCT TCCTTAATAG 301 CAAAGGTAGC AACAGCCCAG GATGATATAA CTGGTGATGG TACGACTTCT AATGTCCTAA 361 TCATTGGAGA GCTGCTGAAA CAGGCGGATC TCTACATTTC TGAAGGCCTT CATCCTAGAA 421 TAATCACTGA AGGATTTGAA GCTGCAAAGG AAAAGGCCCT TCAGTTTTTG GAAGAAGTCA 481 AAGTAAGCAG AGAGATGGAC AGGGAAACAC TTATAGATGT GGCCAGAACA TCTCTTCGTA 541 CTAAAGTTCA TGCTGAACTT GCAGATGTCT TAACAGAGGC TGTAGTGGAC TCCATTTTGG 601 CCATTAAAAA GCAAGATGAA CCTATTGATC TCTTCATGAT TGAGATCATG GAGATGAAAC 661 ATAAATCTGA AACTGATACA AGCTTAATCA GAGGGCTTGT TTTGGACCAC GGAGCACGGC 721 ATCCTGATAT GAAGAAAAGG GTGGAGGATG CATACATCCT CACTTGTAAC GTGTCATTAG 781 AGTATGAGAA AACAGAAGTG AATTCTGGCT TTTTTTACAA GAGTGCAGAA GAGAGAGAAA 841 AACTCGTGAA AGCTGAAAGA AAATTCATTG AAGATAGGGT TAAAAAAATA ATAGAACTGA 901 AAAGGAAAGT CTGTGGCGAT TCAGATAAAG GATTTGTTGT TATTAATCAA AAGGGAATTG 961 ACCCCTTTTC CTTAGATGCT CTTTCAAAAG AAGGCATAGT TGCTCTGCGC AGAGCTAAAA 1021 GGAGAAATAT GGAGAGGCTG ACTCTTGCTT GTGGTGGGGT AGCCCTGAAT TCTTTTGACG 1081 ACCTAAGTCC TGACTGCTTG GGACATGCAG GACTTGTATA TGAGTATACA TTGGGAGAAG 1141 AGAAGTTTAC CTTTATTGAG AAATGTAACA ACCCTCGTTC TGTCACATTA TTGATCAAAG 1201 GACCAAATAA GCACACACTC ACTCAGATCA AAGATGCAGT GAGGGACGGC TTGAGGGCTG 1261 TCAAAAATGC TATTGATGAT GGCTGTGTGG TTCCAGGTGC TGGTGCCGTG GAAGTGGCAA 1321 TGGCAGAAGC CCTGATTAAA CATAAGCCCA GTGTAAAGGG CAGGGCACAG CTTGGAGTCC 1381 AAGCATTTGC TGATGCATTG CTCATTATTC CCAAGGTTCT TGCTCAGAAC TCTGGTTTTG 1441 ACCTTCAGGA AACATTAGTT AAAATTCAAG CAGAACATTC AGAATCAGGT CAGCTTGTGG 1501 GTGTGGACCT GAACACAGGT GAGCCAATGG TGGCAGCAGA AGTAGGCGTA TGGGATAACT 1561 ATTGTGTAAA GAAACAGCTT CTTCACTCCT GCACTGTGAT TGCCACCAAC ATTCTCTTGG 1621 TTGATGAGAT CATGCGAGCT GGAATGTCTT CTCTGAAAGG TTTGCCAACT TTCTTGTACA 1681 AAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac