Construct: ORF ccsbBroadEn_00591

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014255.1_s300c1, BRDN0000397343
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FRG1 (2483)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2483 FRG1 FSHD region gene 1 NM_004477.3 100% 100%
2 human 100289097 FRG1CP FSHD region gene 1 family m... NR_132315.1 86.8% (many diffs)
3 human 102723780 FRG1FP FSHD region gene 1 family m... NR_132320.1 65.5% (many diffs)
4 human 102723316 FRG1DP FSHD region gene 1 family m... NR_132316.1 65% (many diffs)
5 human 284802 FRG1BP FSHD region gene 1 family m... NR_003579.2 63.4% (many diffs)
6 human 2483 FRG1 FSHD region gene 1 XM_017007958.1 50.3% 45.3% 0_1ins211;48_49ins173
7 human 102724813 LOC102724813 protein FRG1B XM_011546192.2 39% 36% (many diffs)
8 human 102724813 LOC102724813 protein FRG1B XM_011546196.3 39% 37.2% (many diffs)
9 human 102724813 LOC102724813 protein FRG1B XM_011546191.3 38.7% 35.7% (many diffs)
10 human 102724813 LOC102724813 protein FRG1B XM_011546190.3 35.1% 32.1% (many diffs)
11 human 102724813 LOC102724813 protein FRG1B XM_017030110.1 35.1% 32.1% (many diffs)
12 human 642236 FRG1JP FSHD region gene 1 family m... NR_033907.2 33.2% (many diffs)
13 human 284802 FRG1BP FSHD region gene 1 family m... NR_145491.1 20.2% (many diffs)
14 human 283788 LOC283788 FSHD region gene 1 pseudogene NR_027436.2 15% (many diffs)
15 human 2483 FRG1 FSHD region gene 1 XR_002959721.1 14.1% (many diffs)
16 mouse 14300 Frg1 FSHD region gene 1 NM_013522.3 90.1% 97.2% (many diffs)
17 mouse 14300 Frg1 FSHD region gene 1 XM_017312570.1 90.1% 97.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
840
ORF length:
774
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CGAGTACTCC TACGTGAAGT CTACCAAGCT CGTGCTCAAG GGAACCAAGA
121CGAAGAGTAA GAAGAAAAAG AGCAAAGATA AGAAAAGAAA AAGAGAAGAA GATGAAGAAA
181CCCAGCTTGA TATTGTTGGA ATCTGGTGGA CAGTAACAAA CTTTGGTGAA ATTTCAGGAA
241CCATAGCCAT TGAAATGGAT AAGGGAACCT ATATACATGC ACTCGACAAT GGTCTTTTTA
301CCCTGGGAGC TCCACACAAA GAAGTTGATG AGGGCCCTAG TCCTCCAGAG CAGTTTACGG
361CTGTCAAATT ATCTGATTCC AGAATCGCCC TGAAGTCTGG CTATGGAAAA TATCTTGGTA
421TAAATTCAGA TGGACTTGTT GTTGGGCGTT CAGATGCAAT TGGACCAAGA GAACAATGGG
481AACCAGTCTT TCAAAATGGG AAAATGGCTT TGTTGGCCTC AAATAGCTGC TTTATTAGAT
541GCAATGAAGC AGGGGACATA GAAGCAAAAA GTAAAACAGC AGGAGAAGAA GAAATGATCA
601AGATTAGATC CTGTGCTGAA AGAGAAACCA AGAAAAAAGA TGACATTCCA GAAGAAGACA
661AAGGAAATGT AAAACAATGT GAAATCAATT ATGTAAAGAA ATTTCAGAGC TTCCAAGACC
721ACAAACTTAA AATAAGTAAA GAAGACAGTA AAATTCTTAA AAAGGCTCGG AAAGATGGAT
781TTTTGCATGA GACGCTTCTG GACAGGAGAG CCAAATTGAA AGCCGACAGA TACTGCAAGT
841GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
901acgaac

Download FASTA (ORF) (Full)