Construct: ORF ccsbBroadEn_00605
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006786.1_s300c1, BRDN0000390707
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GAB1 (2549)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2549 | GAB1 | GRB2 associated binding pro... | NM_207123.3 | 100% | 100% | |
| 2 | human | 2549 | GAB1 | GRB2 associated binding pro... | XM_017007968.1 | 97.8% | 97.2% | (many diffs) |
| 3 | human | 2549 | GAB1 | GRB2 associated binding pro... | NM_002039.4 | 95.8% | 95.8% | 1584_1585ins90 |
| 4 | human | 2549 | GAB1 | GRB2 associated binding pro... | XM_017007966.1 | 94.3% | 93.6% | (many diffs) |
| 5 | human | 2549 | GAB1 | GRB2 associated binding pro... | XM_017007967.1 | 93.4% | 93.2% | (many diffs) |
| 6 | human | 2549 | GAB1 | GRB2 associated binding pro... | XM_017007971.1 | 85.7% | 85.7% | 0_1ins309 |
| 7 | human | 2549 | GAB1 | GRB2 associated binding pro... | XM_006714167.4 | 82.6% | 82.5% | 0_1ins309;285_365del |
| 8 | human | 2549 | GAB1 | GRB2 associated binding pro... | XM_006714168.4 | 82.6% | 82.5% | 0_1ins309;285_365del |
| 9 | human | 2549 | GAB1 | GRB2 associated binding pro... | XM_017007969.1 | 82.6% | 82.5% | 0_1ins309;285_365del |
| 10 | human | 2549 | GAB1 | GRB2 associated binding pro... | XM_017007970.1 | 82.6% | 82.5% | 0_1ins309;285_365del |
| 11 | mouse | 14388 | Gab1 | growth factor receptor boun... | NM_001301298.1 | 84.7% | 90.4% | (many diffs) |
| 12 | mouse | 14388 | Gab1 | growth factor receptor boun... | XM_006530674.3 | 81.6% | 85.3% | (many diffs) |
| 13 | mouse | 14388 | Gab1 | growth factor receptor boun... | NM_021356.2 | 80.7% | 86.4% | (many diffs) |
| 14 | mouse | 14388 | Gab1 | growth factor receptor boun... | XM_017312575.1 | 77.7% | 81.5% | (many diffs) |
| 15 | mouse | 14388 | Gab1 | growth factor receptor boun... | XM_006530676.3 | 72.1% | 76.4% | (many diffs) |
| 16 | mouse | 14388 | Gab1 | growth factor receptor boun... | XM_011248309.2 | 72.1% | 76.4% | (many diffs) |
| 17 | mouse | 14388 | Gab1 | growth factor receptor boun... | XM_011248310.2 | 72.1% | 76.4% | (many diffs) |
| 18 | mouse | 14388 | Gab1 | growth factor receptor boun... | XM_017312576.1 | 72.1% | 76.4% | (many diffs) |
| 19 | mouse | 14388 | Gab1 | growth factor receptor boun... | XM_006530677.3 | 71.6% | 73.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2238
- ORF length:
- 2172
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG CGGTGGTGAA GTGGTCTGCT CCGGATGGCT CCGCAAGTCC CCCCCGGAGA 121 AAAAGTTGAA GCGTTATGCA TGGAAGAGGA GATGGTTCGT GTTACGCAGT GGCCGTTTAA 181 CTGGAGATCC AGATGTTTTG GAATATTACA AAAATGATCA TGCCAAGAAG CCTATTCGTA 241 TTATTGATTT AAATTTATGT CAACAAGTAG ATGCTGGATT GACATTTAAC AAAAAAGAGT 301 TTGAAAACAG CTACATTTTT GATATCAACA CTATTGACCG GATTTTCTAC TTGGTAGCAG 361 ACAGCGAGGA GGAGATGAAT AAGTGGGTTC GTTGTATTTG TGACATCTGT GGGTTTAATC 421 CAACAGAAGA AGATCCTGTG AAGCCACCTG GCAGCTCTTT ACAAGCACCA GCTGATTTAC 481 CTTTAGCTAT AAATACAGCA CCACCATCCA CCCAGGCAGA TTCATCCTCT GCTACTCTAC 541 CTCCTCCATA TCAGCTAATC AATGTTCCAC CACACCTGGA AACTCTTGGC ATTCAGGAGG 601 ATCCTCAAGA CTACCTGTTG CTCATCAACT GTCAAAGCAA GAAGCCCGAA CCCACCAGAA 661 CGCATGCTGA TTCTGCAAAA TCCACCTCTT CTGAAACAGA CTGCAATGAT AACGTCCCTT 721 CTCATAAAAA TCCTGCTTCC TCCCAGAGCA AACATGGAAT GAATGGCTTT TTTCAGCAGC 781 AAATGATATA CGACTCTCCA CCTTCACGTG CCCCATCTGC TTCAGTTGAC TCCAGCCTTT 841 ATAACCTGCC CAGGAGTTAT TCCCATGATG TTTTACCAAA GGTGTCTCCA TCAAGTACTG 901 AAGCAGATGG AGAACTCTAT GTTTTTAATA CCCCATCTGG GACATCGAGT GTAGAGACTC 961 AAATGAGGCA TGTATCTATT AGTTATGACA TTCCTCCAAC ACCTGGTAAT ACTTATCAGA 1021 TTCCACGAAC ATTTCCAGAA GGAACCTTGG GACAGACATC AAAGCTAGAC ACTATTCCAG 1081 ATATTCCTCC ACCTCGGCCA CCGAAACCAC ATCCAGCTCA TGACCGATCT CCTGTGGAAA 1141 CGTGTAGTAT CCCACGCACC GCCTCAGACA CTGACAGTAG TTACTGTATC CCTACAGCAG 1201 GGATGTCGCC TTCACGTAGT AATACCATTT CCACTGTGGA TTTAAACAAA TTGCGAAAAG 1261 ATGCTAGTTC TCAAGACTGC TATGATATTC CACGAGCATT TCCAAGTGAT AGATCTAGTT 1321 CACTTGAAGG CTTCCATAAC CACTTTAAAG TCAAAAATGT GTTGACAGTG GGAAGTGTTT 1381 CAAGTGAAGA ACTGGATGAA AATTACGTCC CAATGAATCC CAATTCACCA CCACGACAAC 1441 ATTCCAGCAG TTTTACAGAA CCAATTCAGG AAGCAAATTA TGTGCCAATG ACTCCAGGAA 1501 CATTTGATTT TTCCTCATTT GGAATGCAAG TTCCTCCTCC TGCTCATATG GGCTTCAGGT 1561 CCAGCCCAAA AACCCCTCCC AGAAGGCCAG TTCCTGTTGC AGACTGTGAA CCACCCCCCG 1621 TGGATAGGAA CCTCAAGCCA GACAGAAAAG GTCAAAGTCC TAAAATTTTA AGACTCAAAC 1681 CCCATGGTTT AGAGCGAACT GATTCACAAA CCATAGGTGA CTTTGCTACA AGAAGAAAGG 1741 TCAAGCCAGC GCCTTTAGAA ATAAAACCTT TGCCAGAATG GGAAGAATTA CAAGCCCCAG 1801 TTAGATCTCC CATCACTAGG AGTTTTGCTC GAGACTCTTC CAGGTTTCCC ATGTCCCCCC 1861 GACCAGATTC AGTGCATAGC ACAACTTCAA GCAGTGACTC ACACGACAGT GAAGAGAATT 1921 ATGTTCCCAT GAACCCAAAC CTGTCCAGTG AAGACCCAAA TCTCTTTGGC AGTAACAGTC 1981 TTGATGGAGG AAGCAGCCCT ATGATCAAGC CCAAAGGAGA CAAACAGGTG GAATACTTAG 2041 ATCTCGACTT AGATTCTGGG AAATCCACAC CACCACGTAA GCAAAAGAGC AGTGGCTCAG 2101 GCAGCAGTGT AGCAGATGAG AGAGTGGATT ATGTTGTTGT TGACCAACAG AAGACCTTGG 2161 CTCTAAAGAG TACCCGGGAA GCCTGGACAG ATGGGAGACA GTCCACAGAA TCAGAAACGC 2221 CAGCGAAGAG TGTGAAATGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 2281 gcttatcaat ttgttgcaac gaac