Construct: ORF ccsbBroadEn_00765
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005072.1_s300c1, BRDN0000392466
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HNRNPA1 (3178)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3178 | HNRNPA1 | heterogeneous nuclear ribon... | NM_002136.4 | 100% | 100% | |
| 2 | human | 144983 | HNRNPA1L2 | heterogeneous nuclear ribon... | NM_001011724.2 | 98.4% | 96.8% | (many diffs) |
| 3 | human | 144983 | HNRNPA1L2 | heterogeneous nuclear ribon... | NM_001011725.2 | 98.4% | 96.8% | (many diffs) |
| 4 | human | 3178 | HNRNPA1 | heterogeneous nuclear ribon... | NM_031157.4 | 86% | 86% | 750_905del |
| 5 | human | 3178 | HNRNPA1 | heterogeneous nuclear ribon... | XM_005268826.2 | 86% | 86% | 750_905del |
| 6 | human | 3178 | HNRNPA1 | heterogeneous nuclear ribon... | NR_135167.2 | 76.4% | 1_82del;1043_1255del | |
| 7 | human | 664709 | HNRNPA1P10 | heterogeneous nuclear ribon... | NR_002944.2 | 70.4% | (many diffs) | |
| 8 | human | 3178 | HNRNPA1 | heterogeneous nuclear ribon... | XR_245923.2 | 68.5% | 1_72del;822_977del;1189_1401del | |
| 9 | human | 728643 | HNRNPA1P33 | heterogeneous nuclear ribon... | NR_003277.1 | 47.8% | (many diffs) | |
| 10 | mouse | 15382 | Hnrnpa1 | heterogeneous nuclear ribon... | NM_010447.5 | 92.6% | 100% | (many diffs) |
| 11 | mouse | 545091 | Hnrnpa1l2-ps2 | heterogeneous nuclear ribon... | NM_001165971.1 | 90.9% | 95.6% | (many diffs) |
| 12 | mouse | 15382 | Hnrnpa1 | heterogeneous nuclear ribon... | NM_001039129.4 | 79.4% | 85.7% | (many diffs) |
| 13 | mouse | 15382 | Hnrnpa1 | heterogeneous nuclear ribon... | NR_104427.1 | 67.1% | (many diffs) | |
| 14 | mouse | 654467 | Gm10052 | predicted pseudogene 10052;... | NR_002885.3 | 62.2% | (many diffs) | |
| 15 | mouse | 434858 | Gm5643 | predicted gene 5643; hetero... | NR_002883.1 | 50.9% | (many diffs) | |
| 16 | mouse | 15382 | Hnrnpa1 | heterogeneous nuclear ribon... | XR_383983.2 | 45.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1026
- ORF length:
- 960
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TAAGTCAGAG TCTCCTAAAG AGCCCGAACA GCTGAGGAAG CTCTTCATTG 121 GAGGGTTGAG CTTTGAAACA ACTGATGAGA GCCTGAGGAG CCATTTTGAG CAATGGGGAA 181 CGCTCACGGA CTGTGTGGTA ATGAGAGATC CAAACACCAA GCGCTCCAGG GGCTTTGGGT 241 TTGTCACATA TGCCACTGTG GAGGAGGTGG ATGCAGCTAT GAATGCAAGG CCACACAAGG 301 TGGATGGAAG AGTTGTGGAA CCAAAGAGAG CTGTCTCCAG AGAAGATTCT CAAAGACCAG 361 GTGCCCACTT AACTGTGAAA AAGATATTTG TTGGTGGCAT TAAAGAAGAC ACTGAAGAAC 421 ATCACCTAAG AGATTATTTT GAACAGTATG GAAAAATTGA AGTGATTGAA ATCATGACTG 481 ACCGAGGCAG TGGCAAGAAA AGGGGCTTTG CCTTTGTAAC CTTTGACGAC CATGACTCCG 541 TGGATAAGAT TGTCATTCAG AAATACCATA CTGTGAATGG CCACAACTGT GAAGTTAGAA 601 AAGCCCTGTC AAAGCAAGAG ATGGCTAGTG CTTCATCCAG CCAAAGAGGT CGAAGTGGTT 661 CTGGAAACTT TGGTGGTGGT CGTGGAGGTG GTTTCGGTGG GAATGACAAC TTCGGTCGTG 721 GAGGAAACTT CAGTGGTCGT GGTGGCTTTG GTGGCAGCCG TGGTGGTGGT GGATATGGTG 781 GCAGTGGGGA TGGCTATAAT GGATTTGGTA ATGATGGAAG CAATTTTGGA GGTGGTGGAA 841 GCTACAATGA TTTTGGGAAT TACAACAATC AGTCTTCAAA TTTTGGACCC ATGAAGGGAG 901 GAAATTTTGG AGGCAGAAGC TCTGGCCCCT ATGGCGGTGG AGGCCAATAC TTTGCAAAAC 961 CACGAAACCA AGGTGGCTAT GGCGGTTCCA GCAGCAGCAG TAGCTATGGC AGTGGCAGAA 1021 GATTTTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 1081 gttgcaacga ac