Construct: ORF ccsbBroadEn_00910
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000336.1_s300c1, BRDN0000390293
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KLRC1 (3821)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3821 | KLRC1 | killer cell lectin like rec... | NM_213658.2 | 100% | 100% | |
| 2 | human | 3821 | KLRC1 | killer cell lectin like rec... | NM_002259.5 | 99.8% | 99.5% | 86A>G |
| 3 | human | 3821 | KLRC1 | killer cell lectin like rec... | NM_001304448.1 | 97.8% | 97.8% | 684_685insTGTAAGCATAAGCTT |
| 4 | human | 3821 | KLRC1 | killer cell lectin like rec... | XM_024448973.1 | 97.7% | 97.4% | 86A>G;684_685insTGTAAGCATAAGCTT |
| 5 | human | 3821 | KLRC1 | killer cell lectin like rec... | NM_213657.2 | 92.2% | 92.2% | 283_284ins54 |
| 6 | human | 3821 | KLRC1 | killer cell lectin like rec... | NM_007328.4 | 92.1% | 91.8% | 86A>G;283_284ins54 |
| 7 | human | 3822 | KLRC2 | killer cell lectin like rec... | NM_002260.3 | 87.1% | 76.4% | (many diffs) |
| 8 | human | 3823 | KLRC3 | killer cell lectin like rec... | NM_002261.2 | 80.4% | 66.6% | (many diffs) |
| 9 | human | 3823 | KLRC3 | killer cell lectin like rec... | NM_007333.2 | 75.8% | 62.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 765
- ORF length:
- 699
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TAACCAAGGA GTAATCTACT CAGACCTGAA TCTGCCCCCA AACCCAAAGA 121 GGCAGCAACG AAAACCTAAA GGCAATAAAA GCTCCATTTT AGCAACTGAA CAGGAAATAA 181 CCTATGCGGA ATTAAACCTT CAAAAAGCTT CTCAGGATTT TCAAGGGAAT GACAAAACCT 241 ATCACTGCAA AGATTTACCA TCAGCTCCAG AGAAGCTCAT TGTTGGGATC CTGGGAATTA 301 TCTGTCTTAT CTTAATGGCC TCTGTGGTAA CGATAGTTGT TATTCCCTCT ACATTAATAC 361 AGAGGCACAA CAATTCTTCC CTGAATACAA GAACTCAGAA AGCACGTCAT TGTGGCCATT 421 GTCCTGAGGA GTGGATTACA TATTCCAACA GTTGTTACTA CATTGGTAAG GAAAGAAGAA 481 CTTGGGAAGA GAGTTTGCTG GCCTGTACTT CGAAGAACTC CAGTCTGCTT TCTATAGATA 541 ATGAAGAAGA AATGAAATTT CTGTCCATCA TTTCACCATC CTCATGGATT GGTGTGTTTC 601 GTAACAGCAG TCATCATCCA TGGGTGACAA TGAATGGTTT GGCTTTCAAA CATGAGATAA 661 AAGACTCAGA TAATGCTGAA CTTAACTGTG CAGTGCTACA AGTAAATCGA CTTAAATCAG 721 CCCAGTGTGG ATCTTCAATA ATATATCATT GTAAGCATAA GCTTTACCCA ACTTTCTTGT 781 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c