Transcript: Human NM_213657.2

Homo sapiens killer cell lectin like receptor C1 (KLRC1), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-09-22
Taxon:
Homo sapiens (human)
Gene:
KLRC1 (3821)
Length:
1563
CDS:
389..1036

Additional Resources:

NCBI RefSeq record:
NM_213657.2
NBCI Gene record:
KLRC1 (3821)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_213657.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000413222 GAAATAACCTATGCGGAATTA pLKO_005 497 CDS 100% 13.200 18.480 N KLRC1 n/a
2 TRCN0000436977 TGGCCTCTGTGGTAACGATAG pLKO_005 639 CDS 100% 6.000 8.400 N KLRC1 n/a
3 TRCN0000424736 AGAGGTAAAGCGTTTGCATTT pLKO_005 1035 CDS 100% 10.800 7.560 N KLRC1 n/a
4 TRCN0000057352 GCTCCAGAGAAGCTCATTGTT pLKO.1 587 CDS 100% 5.625 3.938 N KLRC1 n/a
5 TRCN0000057350 CCATCATTTCACCATCCTCAT pLKO.1 834 CDS 100% 4.050 2.835 N KLRC1 n/a
6 TRCN0000057349 CCTGGGAATTATCTGTCTTAT pLKO.1 613 CDS 100% 13.200 7.920 N KLRC1 n/a
7 TRCN0000057403 GCTACAAGTAAATCGACTTAA pLKO.1 964 CDS 100% 13.200 6.600 Y KLRC2 n/a
8 TRCN0000057407 CCAGTCTGCTTTCTATAGATA pLKO.1 789 CDS 100% 5.625 2.813 Y KLRC2 n/a
9 TRCN0000428920 AGTCAGCTTATAGGAAGTACC pLKO_005 1284 3UTR 100% 4.050 2.025 Y KLRC2 n/a
10 TRCN0000057348 GCATGTTATGTGAGTCAGCTT pLKO.1 1272 3UTR 100% 2.640 1.320 Y KLRC1 n/a
11 TRCN0000057351 CGATAGTTGTTATTCCCTCTA pLKO.1 654 CDS 100% 4.050 2.835 N KLRC1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_213657.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06494 pDONR223 100% 99.8% 99.5% None 12A>T n/a
2 ccsbBroad304_06494 pLX_304 0% 99.8% 99.5% V5 12A>T n/a
3 TRCN0000472306 ACCGACGGTGTTGTACGCAGAAAC pLX_317 78.6% 99.8% 99.5% V5 12A>T n/a
4 ccsbBroadEn_00910 pDONR223 100% 92.2% 92.2% None 283_284ins54 n/a
5 ccsbBroad304_00910 pLX_304 0% 92.2% 92.2% V5 283_284ins54 n/a
6 TRCN0000471458 AGCTCAATCAACTCAACCTTACAA pLX_317 48.8% 92.2% 92.2% V5 283_284ins54 n/a
7 ccsbBroadEn_06495 pDONR223 100% 82.8% 73.1% None (many diffs) n/a
8 ccsbBroad304_06495 pLX_304 0% 82.8% 73.1% V5 (many diffs) n/a
9 TRCN0000477104 TTGCGAATGTCGGCCTCGTCGGGG pLX_317 49% 82.8% 73.1% V5 (many diffs) n/a
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