Construct: ORF ccsbBroadEn_00977
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013782.1_s300c1, BRDN0000384960
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MAX (4149)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4149 | MAX | MYC associated factor X | NM_145114.2 | 100% | 100% | |
| 2 | human | 4149 | MAX | MYC associated factor X | NM_001271068.1 | 90.6% | 90.6% | 36_37ins27 |
| 3 | human | 4149 | MAX | MYC associated factor X | NM_197957.3 | 69.6% | 63% | (many diffs) |
| 4 | human | 4149 | MAX | MYC associated factor X | NM_145113.3 | 69.5% | 57.7% | (many diffs) |
| 5 | human | 4149 | MAX | MYC associated factor X | NM_001271069.1 | 60.9% | 54% | (many diffs) |
| 6 | human | 4149 | MAX | MYC associated factor X | XM_011536773.3 | 51.4% | 39.6% | (many diffs) |
| 7 | human | 4149 | MAX | MYC associated factor X | NM_002382.5 | 45.9% | 37.9% | (many diffs) |
| 8 | human | 4149 | MAX | MYC associated factor X | NM_145112.3 | 40.7% | 32.5% | (many diffs) |
| 9 | human | 4149 | MAX | MYC associated factor X | NR_073138.1 | 30.8% | (many diffs) | |
| 10 | human | 4149 | MAX | MYC associated factor X | XR_943450.3 | 11.9% | (many diffs) | |
| 11 | human | 4149 | MAX | MYC associated factor X | XR_943451.3 | 11.8% | (many diffs) | |
| 12 | human | 4149 | MAX | MYC associated factor X | XR_001750327.2 | 10.9% | (many diffs) | |
| 13 | human | 4149 | MAX | MYC associated factor X | XR_001750326.2 | 10.6% | (many diffs) | |
| 14 | human | 4149 | MAX | MYC associated factor X | XR_002957553.1 | 8.5% | (many diffs) | |
| 15 | mouse | 17187 | Max | Max protein | NM_008558.2 | 48.2% | 37.9% | (many diffs) |
| 16 | mouse | 17187 | Max | Max protein | XR_381483.3 | 11.3% | (many diffs) | |
| 17 | mouse | 17187 | Max | Max protein | XR_872708.2 | 11% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 354
- ORF length:
- 288
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TNGGCATGAG CGATAACGAT GACATCGAGG TGGAGAGCGA CGAAGAGCAA CCGAGGTTTC 121 AATCTGCGGC TGACAAACGG GCTCATCATA ATGCACTGGA ACGAAAACGT AGGGACCACA 181 TCAAAGACAG CTTTCACAGT TTGCGGGACT CAGTCCCATC ACTCCAAGGA GAGAAGCTCT 241 ATTTCCTCTT TTGGAAATTG TGTACTCCTG TCCTTCATCG TCAAAGTTTG ATGCAGAAAT 301 GCCACACCTT CATTTCAAGC TACCAAGTGC ACAAGAAAAA AGAATGCAAG ATTTACCCAA 361 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac