Construct: ORF ccsbBroadEn_01233
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003958.1_s300c1, BRDN0000391416
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SEPTIN4 (5414)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 5414 | SEPTIN4 | septin 4 | NM_004574.4 | 100% | 100% | |
2 | human | 5414 | SEPTIN4 | septin 4 | NM_001198713.1 | 97.6% | 95.6% | (many diffs) |
3 | human | 5414 | SEPTIN4 | septin 4 | NM_001368772.1 | 97.5% | 96% | (many diffs) |
4 | human | 5414 | SEPTIN4 | septin 4 | XM_006721949.3 | 96.9% | 95.6% | (many diffs) |
5 | human | 5414 | SEPTIN4 | septin 4 | NM_080416.3 | 95.8% | 95.8% | 1_2delATins59 |
6 | human | 5414 | SEPTIN4 | septin 4 | NM_001256782.1 | 94.8% | 93.9% | (many diffs) |
7 | human | 5414 | SEPTIN4 | septin 4 | NM_001363803.1 | 79.2% | 79.2% | 59_60ins297 |
8 | human | 5414 | SEPTIN4 | septin 4 | XM_006721950.4 | 79.2% | 75.6% | (many diffs) |
9 | human | 5414 | SEPTIN4 | septin 4 | NR_104197.1 | 78.2% | (many diffs) | |
10 | human | 5414 | SEPTIN4 | septin 4 | XR_002958032.1 | 77.6% | (many diffs) | |
11 | human | 5414 | SEPTIN4 | septin 4 | XR_002958031.1 | 75.7% | (many diffs) | |
12 | human | 5414 | SEPTIN4 | septin 4 | XM_006721952.3 | 75.3% | 75.1% | 0_1ins346;2_3insTCCTCTGA |
13 | human | 5414 | SEPTIN4 | septin 4 | XR_002958037.1 | 74.5% | (many diffs) | |
14 | human | 5414 | SEPTIN4 | septin 4 | NR_104196.1 | 69.5% | 1_293del;1571_1725del;1883_2063del | |
15 | human | 5414 | SEPTIN4 | septin 4 | NM_001256822.1 | 69.2% | 69.2% | 0_1ins441 |
16 | human | 5414 | SEPTIN4 | septin 4 | XM_006721954.3 | 69.2% | 69.2% | 0_1ins441 |
17 | human | 5414 | SEPTIN4 | septin 4 | XM_006721955.3 | 69.2% | 69.2% | 0_1ins441 |
18 | human | 5414 | SEPTIN4 | septin 4 | XM_011524911.1 | 69.2% | 69.2% | 0_1ins441 |
19 | human | 5414 | SEPTIN4 | septin 4 | XM_011524912.2 | 69.2% | 69.2% | 0_1ins441 |
20 | human | 5414 | SEPTIN4 | septin 4 | XM_024450807.1 | 69.2% | 69.2% | 0_1ins441 |
21 | human | 5414 | SEPTIN4 | septin 4 | XM_024450808.1 | 69.2% | 69.2% | 0_1ins441 |
22 | human | 5414 | SEPTIN4 | septin 4 | XR_002958034.1 | 67.5% | (many diffs) | |
23 | human | 5414 | SEPTIN4 | septin 4 | XR_002958039.1 | 67.2% | (many diffs) | |
24 | human | 5414 | SEPTIN4 | septin 4 | XR_002958036.1 | 64.1% | (many diffs) | |
25 | human | 5414 | SEPTIN4 | septin 4 | XR_002958033.1 | 63.8% | (many diffs) | |
26 | human | 5414 | SEPTIN4 | septin 4 | NR_037155.2 | 58.9% | (many diffs) | |
27 | human | 5414 | SEPTIN4 | septin 4 | NM_080415.3 | 54.3% | 52.3% | (many diffs) |
28 | human | 5414 | SEPTIN4 | septin 4 | XR_002958040.1 | 47.4% | (many diffs) | |
29 | human | 5414 | SEPTIN4 | septin 4 | NM_001368771.2 | 47.1% | 45.8% | (many diffs) |
30 | human | 5414 | SEPTIN4 | septin 4 | XR_002958035.1 | 34.1% | (many diffs) | |
31 | human | 5414 | SEPTIN4 | septin 4 | XR_002958038.1 | 29.2% | (many diffs) | |
32 | mouse | 18952 | Sept4 | septin 4 | NM_011129.2 | 89.7% | 92.6% | (many diffs) |
33 | mouse | 18952 | Sept4 | septin 4 | XM_006532497.3 | 87.3% | 89.5% | (many diffs) |
34 | mouse | 18952 | Sept4 | septin 4 | NM_001368776.1 | 86.3% | 87.8% | (many diffs) |
35 | mouse | 18952 | Sept4 | septin 4 | NM_001361936.1 | 85.8% | 88.9% | (many diffs) |
36 | mouse | 18952 | Sept4 | septin 4 | NM_001284394.1 | 81.1% | 82.4% | (many diffs) |
37 | mouse | 18952 | Sept4 | septin 4 | XM_030245664.1 | 78.8% | 79.2% | (many diffs) |
38 | mouse | 18952 | Sept4 | septin 4 | NM_001368779.1 | 77.8% | 77.7% | (many diffs) |
39 | mouse | 18952 | Sept4 | septin 4 | NM_001368778.1 | 77.3% | 78.6% | (many diffs) |
40 | mouse | 18952 | Sept4 | septin 4 | NM_001284392.1 | 72.4% | 77.8% | (many diffs) |
41 | mouse | 18952 | Sept4 | septin 4 | XM_030245665.1 | 69.6% | 74.8% | (many diffs) |
42 | mouse | 18952 | Sept4 | septin 4 | NM_001368777.1 | 68.7% | 74% | (many diffs) |
43 | mouse | 18952 | Sept4 | septin 4 | XM_030245666.1 | 63.8% | 67.5% | (many diffs) |
44 | mouse | 18952 | Sept4 | septin 4 | XM_030245667.1 | 63% | 68.2% | (many diffs) |
45 | mouse | 18952 | Sept4 | septin 4 | NM_001284398.1 | 60.1% | 63.8% | (many diffs) |
46 | mouse | 18952 | Sept4 | septin 4 | XM_006532493.2 | 43.5% | 43.7% | (many diffs) |
47 | mouse | 18952 | Sept4 | septin 4 | NM_001368775.1 | 39.3% | 38.7% | (many diffs) |
48 | mouse | 18952 | Sept4 | septin 4 | XR_388364.2 | 36.6% | (many diffs) | |
49 | mouse | 18952 | Sept4 | septin 4 | XR_001779919.2 | 35.1% | (many diffs) | |
50 | mouse | 18952 | Sept4 | septin 4 | XM_030245663.1 | 26.8% | 23.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1503
- ORF length:
- 1434
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGACCGTTCA CTGGGATGGC AAGGGAATTC TGTCCCTGAG GACAGGACTG 121 AAGCTGGGAT CAAGCGTTTC CTGGAGGACA CCACGGATGA TGGAGAACTG AGCAAGTTCG 181 TGAAGGATTT CTCAGGAAAT GCGAGCTGCC ACCCACCAGA GGCTAAGACC TGGGCATCCA 241 GGCCCCAAGT CCCGGAGCCA AGGCCCCAGG CCCCGGACCT CTATGATGAT GACCTGGAGT 301 TCAGACCCCC CTCGCGGCCC CAGTCCTCTG ACAACCAGCA GTACTTCTGT GCCCCAGCCC 361 CTCTCAGCCC ATCTGCCAGG CCCCGCAGCC CATGGGGCAA GCTTGATCCC TATGATTCCT 421 CTGAGGATGA CAAGGAGTAT GTGGGCTTTG CAACCCTCCC CAACCAAGTC CACCGAAAGT 481 CCGTGAAGAA AGGCTTTGAC TTTACCCTCA TGGTGGCAGG AGAGTCTGGC CTGGGCAAAT 541 CCACACTTGT CAATAGCCTC TTCCTCACTG ATCTGTACCG GGACCGGAAA CTTCTTGGTG 601 CTGAAGAGAG GATCATGCAA ACTGTGGAGA TCACTAAGCA TGCAGTGGAC ATAGAAGAGA 661 AGGGTGTGAG GCTGCGGCTC ACCATTGTGG ACACACCAGG TTTTGGGGAT GCAGTCAACA 721 ACACAGAGTG CTGGAAGCCT GTGGCAGAAT ACATTGATCA GCAGTTTGAG CAGTATTTCC 781 GAGACGAGAG TGGCCTGAAC CGAAAGAACA TCCAAGACAA CAGGGTGCAC TGCTGCCTGT 841 ACTTCATCTC ACCCTTCGGC CATGGGCTCC GGCCATTGGA TGTTGAATTC ATGAAGGCCC 901 TGCATCAGCG GGTCAACATC GTGCCTATCC TGGCTAAGGC AGACACACTG ACACCTCCCG 961 AAGTGGACCA CAAGAAACGC AAAATCCGGG AGGAGATTGA GCATTTTGGA ATCAAGATCT 1021 ATCAATTCCC AGACTGTGAC TCTGATGAGG ATGAGGACTT CAAATTGCAG GACCAAGCCC 1081 TAAAGGAAAG CATCCCATTT GCAGTAATTG GCAGCAACAC TGTAGTAGAG GCCAGAGGGC 1141 GGCGAGTTCG GGGTCGACTC TACCCCTGGG GCATCGTGGA AGTGGAAAAC CCAGGGCACT 1201 GCGACTTTGT GAAGCTGAGG ACAATGCTGG TACGTACCCA CATGCAGGAC CTGAAGGATG 1261 TGACACGGGA GACACATTAT GAGAACTACC GGGCACAGTG CATCCAGAGC ATGACCCGCC 1321 TGGTGGTGAA GGAACGGAAT CGCAACAAAC TGACTCGGGA AAGTGGTACC GACTTCCCCA 1381 TCCCTGCTGT CCCACCAGGG ACAGATCCAG AAACTGAGAA GCTTATCCGA GAGAAAGATG 1441 AGGAGCTGCG GCGGATGCAG GAGATGCTAC ACAAAATACA AAAACAGATG AAGGAGAACT 1501 ATTTGCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1561 gcaacgaac