Construct: ORF ccsbBroadEn_01359
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009983.1_s300c1, BRDN0000395847
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RAB3IL1 (5866)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | NM_013401.4 | 99.9% | 100% | 477G>A |
| 2 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | XM_005274140.5 | 88.7% | 88.3% | (many diffs) |
| 3 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | XM_006718647.4 | 88.5% | 88.1% | (many diffs) |
| 4 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | XM_011545198.2 | 84.2% | 82.8% | (many diffs) |
| 5 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | XM_011545197.2 | 82.9% | 80.8% | (many diffs) |
| 6 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | XM_011545196.2 | 75.9% | 74.2% | (many diffs) |
| 7 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | NM_001271686.2 | 71.7% | 71.3% | (many diffs) |
| 8 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | XM_011545199.2 | 61.1% | 59.3% | (many diffs) |
| 9 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | XM_011545200.2 | 50.8% | 49.3% | (many diffs) |
| 10 | human | 5866 | RAB3IL1 | RAB3A interacting protein l... | XM_011545201.3 | 40% | 33.2% | (many diffs) |
| 11 | mouse | 74760 | Rab3il1 | RAB3A interacting protein (... | NM_144538.2 | 84.7% | 85.9% | (many diffs) |
| 12 | mouse | 74760 | Rab3il1 | RAB3A interacting protein (... | XM_006527411.3 | 75.1% | 76.1% | (many diffs) |
| 13 | mouse | 74760 | Rab3il1 | RAB3A interacting protein (... | NM_001347429.1 | 71.5% | 74.6% | (many diffs) |
| 14 | mouse | 74760 | Rab3il1 | RAB3A interacting protein (... | XM_011247385.2 | 63.4% | 66.1% | (many diffs) |
| 15 | mouse | 74760 | Rab3il1 | RAB3A interacting protein (... | XM_017318302.1 | 54.7% | 57.3% | (many diffs) |
| 16 | mouse | 74760 | Rab3il1 | RAB3A interacting protein (... | XR_877693.2 | 44.8% | (many diffs) | |
| 17 | mouse | 74760 | Rab3il1 | RAB3A interacting protein (... | XR_877692.2 | 41.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1212
- ORF length:
- 1146
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG GAGCGGCCCA CCCCAGCCAG ACCAGGGCCT CCCGCCGCCC CTTGCAGCTG 121 TCCCGGTCCC CTGGAAGAGC ACGGACCCCT GCCAAGGCCA CAGGGAGTCC CCAGGAGCCC 181 TGGTGGAGAC CTCTGCAGGG GAGGAGGCCC AAGGCCAGGA GGGCCCCGCA GCCGCCCAGC 241 TGGACGTGTT GCGCCTGCGC AGCTCTTCCA TGGAGATCCG AGAGAAGGGC TCCGAGTTCC 301 TGAAGGAGGA GCTGCACAGA GCGCAGAAGG AGCTGAAGCT AAAGGACGAG GAATGTGAGC 361 GGCTGTCCAA GGTGCGGGAG CAGCTAGAAC AGGAGCTGGA AGAGCTGACG GCCAGCCTGT 421 TTGAGGAAGC TCACAAGATG GTTCGAGAAG CCAACATGAA GCAGGCGGCA TCAGAAAAGC 481 AGCTGAAGGA GGCTCGGGGC AAGATCGACA TGCTGCAGGC AGAGGTGACA GCCTTGAAGA 541 CACTGGTCAT CACGTCCACA CCAGCCTCTC CCAACCGCGA GCTTCACCCC CAGCTGCTGA 601 GCCCCACCAA GGCCGGGCCC CGAAAGGGCC ACTCTCGCCA CAAGAGCACC AGCAGCACCC 661 TCTGCCCCGC CGTGTGTCCC GCTGCGGGAC ACACCCTCAC CCCAGACAGA GAGGGCAAGG 721 AGGTGGACAC AATCCTGTTT GCAGAGTTCC AGGCCTGGAG GGAATCCCCC ACCCTGGACA 781 AGACCTGCCC CTTCCTGGAA AGGGTGTACC GAGAGGACGT GGGCCCCTGC CTGGACTTCA 841 CAATGCAGGA GCTCTCGGTG CTGGTACGGG CCGCCGTGGA GGACAACACG CTCACCATTG 901 AGCCGGTGGC TTCGCAGACG CTGCCCACAG TGAAGGTGGC CGAGGTTGAC TGTAGCAGCA 961 CCAACACATG TGCCCTGAGC GGGCTGACCC GCACCTGCCG CCACCGAATC CGGCTCGGGG 1021 ACTCCAAAAG CCATTACTAC ATCTCGCCAT CTTCCCGGGC CAGGATCACC GCAGTGTGCA 1081 ACTTCTTCAC CTACATCCGC TACATCCAGC AAGGCCTGGT GCGGCAGGAC GCAGAGCCCA 1141 TGTTCTGGGA GATCATGAGG TTGCGGAAGG AGATGTCACT GGCCAAGCTC GGCTTCTTCC 1201 CCCAGGAGGC TTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1261 caatttgttg caacgaac