Construct: ORF ccsbBroadEn_01484
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002499.1_s300c1, BRDN0000386607
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SATB1 (6304)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6304 | SATB1 | SATB homeobox 1 | NM_001131010.4 | 100% | 100% | |
| 2 | human | 6304 | SATB1 | SATB homeobox 1 | NM_001322872.2 | 100% | 100% | |
| 3 | human | 6304 | SATB1 | SATB homeobox 1 | NM_001322873.2 | 100% | 100% | |
| 4 | human | 6304 | SATB1 | SATB homeobox 1 | NM_001322874.2 | 100% | 100% | |
| 5 | human | 6304 | SATB1 | SATB homeobox 1 | NM_001322875.1 | 100% | 100% | |
| 6 | human | 6304 | SATB1 | SATB homeobox 1 | NM_002971.6 | 100% | 100% | |
| 7 | human | 6304 | SATB1 | SATB homeobox 1 | NM_001195470.3 | 95.9% | 95.9% | 1776_1871del |
| 8 | human | 6304 | SATB1 | SATB homeobox 1 | NM_001322871.2 | 95.9% | 95.9% | 1776_1871del |
| 9 | human | 6304 | SATB1 | SATB homeobox 1 | XM_011533988.3 | 95.9% | 95.9% | 1776_1871del |
| 10 | human | 6304 | SATB1 | SATB homeobox 1 | XM_011533989.2 | 95.9% | 95.9% | 1776_1871del |
| 11 | human | 6304 | SATB1 | SATB homeobox 1 | NM_001322876.2 | 90.5% | 90.5% | 0_1ins216 |
| 12 | human | 6304 | SATB1 | SATB homeobox 1 | XM_011533990.3 | 69.6% | 68.6% | (many diffs) |
| 13 | mouse | 20230 | Satb1 | special AT-rich sequence bi... | NM_001163630.1 | 91.2% | 98.2% | (many diffs) |
| 14 | mouse | 20230 | Satb1 | special AT-rich sequence bi... | NM_001163631.1 | 91.2% | 98.2% | (many diffs) |
| 15 | mouse | 20230 | Satb1 | special AT-rich sequence bi... | NM_001163632.1 | 91.2% | 98.2% | (many diffs) |
| 16 | mouse | 20230 | Satb1 | special AT-rich sequence bi... | NM_009122.2 | 91.2% | 98.2% | (many diffs) |
| 17 | mouse | 20230 | Satb1 | special AT-rich sequence bi... | XM_017317363.1 | 91.2% | 98.2% | (many diffs) |
| 18 | mouse | 20230 | Satb1 | special AT-rich sequence bi... | XM_017317364.1 | 91.2% | 98.2% | (many diffs) |
| 19 | mouse | 20230 | Satb1 | special AT-rich sequence bi... | XM_006523928.3 | 91.2% | 98.2% | (many diffs) |
| 20 | mouse | 20230 | Satb1 | special AT-rich sequence bi... | XM_017317365.1 | 91.2% | 98.2% | (many diffs) |
| 21 | mouse | 20230 | Satb1 | special AT-rich sequence bi... | XM_006523923.3 | 87.7% | 94.2% | (many diffs) |
| 22 | mouse | 20230 | Satb1 | special AT-rich sequence bi... | XM_006523924.2 | 87.7% | 94.2% | (many diffs) |
| 23 | mouse | 20230 | Satb1 | special AT-rich sequence bi... | XM_006523925.1 | 87.7% | 94.2% | (many diffs) |
| 24 | mouse | 20230 | Satb1 | special AT-rich sequence bi... | XM_006523926.3 | 87.7% | 94.2% | (many diffs) |
| 25 | mouse | 20230 | Satb1 | special AT-rich sequence bi... | XM_006523927.3 | 87.7% | 94.3% | (many diffs) |
| 26 | mouse | 20230 | Satb1 | special AT-rich sequence bi... | XM_017317366.1 | 84.9% | 91.6% | (many diffs) |
| 27 | mouse | 20230 | Satb1 | special AT-rich sequence bi... | XM_006523929.3 | 81.7% | 87.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2355
- ORF length:
- 2289
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TCATTTGAAC GAGGCAACTC AGGGGAAAGA ACATTCAGAA ATGTCTAACA 121 ATGTGAGTGA TCCGAAGGGT CCACCAGCCA AGATTGCCCG CCTGGAGCAG AACGGGAGCC 181 CGCTAGGAAG AGGAAGGCTT GGGAGTACAG GTGCAAAAAT GCAGGGAGTG CCTTTAAAAC 241 ACTCGGGCCA TCTGATGAAA ACCAACCTTA GGAAAGGAAC CATGCTGCCA GTTTTCTGTG 301 TGGTGGAACA TTATGAAAAC GCCATTGAAT ATGATTGCAA GGAGGAGCAT GCAGAATTTG 361 TGCTGGTGAG AAAGGATATG CTTTTCAACC AGCTGATCGA AATGGCATTG CTGTCTCTAG 421 GTTATTCACA TAGCTCTGCT GCCCAGGCCA AAGGGCTAAT CCAGGTTGGA AAGTGGAATC 481 CAGTTCCACT GTCTTACGTG ACAGATGCCC CTGATGCTAC AGTAGCAGAT ATGCTTCAAG 541 ATGTGTATCA TGTGGTCACA TTGAAAATTC AGTTACACAG TTGCCCCAAA CTAGAAGACT 601 TGCCTCCCGA ACAATGGTCG CACACCACAG TGAGGAATGC TCTGAAGGAC TTACTGAAAG 661 ATATGAATCA GAGTTCATTG GCCAAGGAGT GCCCCCTTTC ACAGAGTATG ATTTCTTCCA 721 TTGTGAACAG TACTTACTAT GCAAATGTCT CAGCAGCAAA ATGTCAAGAA TTTGGAAGGT 781 GGTACAAACA TTTCAAGAAG ACAAAAGATA TGATGGTTGA AATGGATAGT CTTTCTGAGC 841 TATCCCAGCA AGGCGCCAAT CATGTCAATT TTGGCCAGCA ACCAGTTCCA GGGAACACAG 901 CCGAGCAGCC TCCATCCCCT GCGCAGCTCT CCCATGGCAG CCAGCCCTCT GTCCGGACAC 961 CTCTTCCAAA CCTGCACCCT GGGCTCGTAT CAACACCTAT CAGTCCTCAA TTGGTCAACC 1021 AGCAGCTGGT GATGGCTCAG CTGCTGAACC AGCAGTATGC AGTGAATAGA CTTTTAGCCC 1081 AGCAGTCCTT AAACCAACAA TACTTGAACC ACCCTCCCCC TGTCAGTAGA TCTATGAATA 1141 AGCCTTTGGA GCAACAGGTT TCGACCAACA CAGAGGTGTC TTCCGAAATC TACCAGTGGG 1201 TACGCGATGA ACTGAAACGA GCAGGAATCT CCCAGGCGGT ATTTGCACGT GTGGCTTTTA 1261 ACAGAACTCA GGGCTTGCTT TCAGAAATCC TCCGAAAGGA AGAGGACCCC AAGACTGCAT 1321 CCCAGTCTTT GCTGGTAAAC CTTCGGGCTA TGCAGAATTT CTTGCAGTTA CCGGAAGCTG 1381 AAAGAGACCG AATATACCAG GACGAAAGGG AAAGGAGCTT GAATGCTGCC TCGGCCATGG 1441 GTCCTGCCCC CCTCATCAGC ACACCACCCA GCCGTCCTCC CCAGGTGAAA ACAGCTACTA 1501 TTGCCACTGA AAGGAATGGG AAACCAGAGA ACAATACCAT GAACATTAAT GCTTCCATTT 1561 ATGATGAGAT TCAGCAGGAA ATGAAGCGTG CTAAAGTGTC TCAAGCACTG TTTGCAAAGG 1621 TTGCAGCAAC CAAAAGCCAG GGATGGTTGT GCGAGCTGTT ACGCTGGAAA GAAGATCCTT 1681 CTCCAGAAAA CAGAACCCTG TGGGAGAACC TCTCCATGAT CCGAAGGTTC CTCAGTCTTC 1741 CTCAGCCAGA ACGTGATGCC ATTTATGAAC AGGAGAGCAA CGCGGTGCAT CACCATGGCG 1801 ACAGGCCGCC CCACATTATC CATGTTCCAG CAGAGCAGAT TCAGCAACAG CAGCAGCAAC 1861 AGCAACAGCA GCAGCAGCAG CAGCAGGCAC CGCCGCCTCC ACAGCCACAG CAGCAGCCAC 1921 AGACAGGCCC TCGGCTCCCC CCACGGCAAC CCACGGTGGC CTCTCCAGCA GAGTCAGATG 1981 AGGAAAACCG ACAGAAGACC CGGCCACGAA CAAAAATTTC AGTGGAAGCC TTGGGAATCC 2041 TCCAGAGTTT CATACAAGAC GTGGGCCTGT ACCCTGACGA AGAGGCCATC CAGACTCTGT 2101 CTGCCCAGCT CGACCTTCCC AAGTACACCA TCATCAAGTT CTTTCAGAAC CAGCGGTACT 2161 ATCTCAAGCA CCACGGCAAA CTGAAGGACA ATTCCGGTTT AGAGGTCGAT GTGGCAGAAT 2221 ATAAAGAAGA GGAGCTGCTG AAGGATTTGG AAGAGAGTGT CCAAGATAAA AATACTAACA 2281 CCCTTTTTTC AGTGAAACTA GAAGAAGAGC TGTCAGTGGA AGGAAACACA GACATTAATA 2341 CTGATTTGAA AGACTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 2401 tatcaatttg ttgcaacgaa c