Construct: ORF ccsbBroadEn_01519

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008261.1_s300c1, BRDN0000384926
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SET (6418)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6418 SET SET nuclear proto-oncogene NM_003011.4 100% 100%
2 human 6418 SET SET nuclear proto-oncogene NM_001248001.2 94.1% 91.6% (many diffs)
3 human 6418 SET SET nuclear proto-oncogene XM_017015016.2 92% 91.5% (many diffs)
4 human 6418 SET SET nuclear proto-oncogene NM_001122821.2 90.5% 89.6% (many diffs)
5 human 6418 SET SET nuclear proto-oncogene NM_001374326.1 90.5% 89.6% (many diffs)
6 human 6418 SET SET nuclear proto-oncogene NM_001248000.2 89.9% 89.1% (many diffs)
7 human 646817 SETSIP SET like protein NM_001287737.1 83.7% 80.9% (many diffs)
8 human 6418 SET SET nuclear proto-oncogene XM_017015013.1 83.6% 82.2% (many diffs)
9 human 6418 SET SET nuclear proto-oncogene XM_017015014.1 83.6% 82.2% (many diffs)
10 human 6418 SET SET nuclear proto-oncogene XM_017015015.1 83.6% 82.2% (many diffs)
11 mouse 56086 Set SET nuclear oncogene NM_001204875.1 93.8% 97.8% (many diffs)
12 mouse 56086 Set SET nuclear oncogene NM_023871.4 86.4% 87.9% (many diffs)
13 mouse 625349 Gm6579 predicted gene 6579 XR_391236.3 44.4% (many diffs)
14 mouse 105246974 Gm42162 predicted gene, 42162 XR_880610.1 37% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
897
ORF length:
831
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC GGCGCCGGCG GCCAAAGTCA GTAAAAAGGA GCTCAACTCC AACCACGACG
121GGGCCGACGA GACCTCAGAA AAAGAACAGC AAGAAGCGAT TGAACACATT GATGAAGTAC
181AAAATGAAAT AGACAGACTT AATGAACAAG CCAGTGAGGA GATTTTGAAA GTAGAACAGA
241AATATAACAA ACTCCGCCAA CCATTTTTTC AGAAGAGGTC AGAATTGATC GCCAAAATCC
301CAAATTTTTG GGTAACAACA TTTGTCAACC ATCCACAAGT GTCTGCACTG CTTGGGGAGG
361AAGATGAAGA GGCACTGCAT TATTTGACCA GAGTTGAAGT GACAGAATTT GAAGATATTA
421AATCAGGTTA CAGAATAGAT TTTTATTTTG ATGAAAATCC TTACTTTGAA AATAAAGTTC
481TCTCCAAAGA ATTTCATCTG AATGAGAGTG GTGATCCATC TTCGAAGTCC ACCGAAATCA
541AATGGAAATC TGGAAAGGAT TTGACGAAAC GTTCGAGTCA AACGCAGAAT AAAGCCAGCA
601GGAAGAGGCA GCATGAGGAA CCAGAGAGCT TCTTTACCTG GTTTACTGAC CATTCTGATG
661CAGGTGCTGA TGAGTTAGGA GAGGTCATCA AAGATGATAT TTGGCCAAAC CCATTACAGT
721ACTACTTGGT TCCCGATATG GATGATGAAG AAGGAGAAGG AGAAGAAGAT GATGATGATG
781ATGAAGAGGA GGAAGGATTA GAAGATATTG ACGAAGAAGG GGATGAGGAT GAAGGTGAAG
841AAGATGAAGA TGATGATGAA GGGGAGGAAG GAGAGGAGGA TGAAGGAGAA GATGACTACC
901CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
961aac

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.