Construct: ORF ccsbBroadEn_01519
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008261.1_s300c1, BRDN0000384926
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SET (6418)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6418 | SET | SET nuclear proto-oncogene | NM_003011.4 | 100% | 100% | |
| 2 | human | 6418 | SET | SET nuclear proto-oncogene | NM_001248001.2 | 94.1% | 91.6% | (many diffs) |
| 3 | human | 6418 | SET | SET nuclear proto-oncogene | XM_017015016.2 | 92% | 91.5% | (many diffs) |
| 4 | human | 6418 | SET | SET nuclear proto-oncogene | NM_001122821.2 | 90.5% | 89.6% | (many diffs) |
| 5 | human | 6418 | SET | SET nuclear proto-oncogene | NM_001374326.1 | 90.5% | 89.6% | (many diffs) |
| 6 | human | 6418 | SET | SET nuclear proto-oncogene | NM_001248000.2 | 89.9% | 89.1% | (many diffs) |
| 7 | human | 646817 | SETSIP | SET like protein | NM_001287737.1 | 83.7% | 80.9% | (many diffs) |
| 8 | human | 6418 | SET | SET nuclear proto-oncogene | XM_017015013.1 | 83.6% | 82.2% | (many diffs) |
| 9 | human | 6418 | SET | SET nuclear proto-oncogene | XM_017015014.1 | 83.6% | 82.2% | (many diffs) |
| 10 | human | 6418 | SET | SET nuclear proto-oncogene | XM_017015015.1 | 83.6% | 82.2% | (many diffs) |
| 11 | mouse | 56086 | Set | SET nuclear oncogene | NM_001204875.1 | 93.8% | 97.8% | (many diffs) |
| 12 | mouse | 56086 | Set | SET nuclear oncogene | NM_023871.4 | 86.4% | 87.9% | (many diffs) |
| 13 | mouse | 625349 | Gm6579 | predicted gene 6579 | XR_391236.3 | 44.4% | (many diffs) | |
| 14 | mouse | 105246974 | Gm42162 | predicted gene, 42162 | XR_880610.1 | 37% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 897
- ORF length:
- 831
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC GGCGCCGGCG GCCAAAGTCA GTAAAAAGGA GCTCAACTCC AACCACGACG 121 GGGCCGACGA GACCTCAGAA AAAGAACAGC AAGAAGCGAT TGAACACATT GATGAAGTAC 181 AAAATGAAAT AGACAGACTT AATGAACAAG CCAGTGAGGA GATTTTGAAA GTAGAACAGA 241 AATATAACAA ACTCCGCCAA CCATTTTTTC AGAAGAGGTC AGAATTGATC GCCAAAATCC 301 CAAATTTTTG GGTAACAACA TTTGTCAACC ATCCACAAGT GTCTGCACTG CTTGGGGAGG 361 AAGATGAAGA GGCACTGCAT TATTTGACCA GAGTTGAAGT GACAGAATTT GAAGATATTA 421 AATCAGGTTA CAGAATAGAT TTTTATTTTG ATGAAAATCC TTACTTTGAA AATAAAGTTC 481 TCTCCAAAGA ATTTCATCTG AATGAGAGTG GTGATCCATC TTCGAAGTCC ACCGAAATCA 541 AATGGAAATC TGGAAAGGAT TTGACGAAAC GTTCGAGTCA AACGCAGAAT AAAGCCAGCA 601 GGAAGAGGCA GCATGAGGAA CCAGAGAGCT TCTTTACCTG GTTTACTGAC CATTCTGATG 661 CAGGTGCTGA TGAGTTAGGA GAGGTCATCA AAGATGATAT TTGGCCAAAC CCATTACAGT 721 ACTACTTGGT TCCCGATATG GATGATGAAG AAGGAGAAGG AGAAGAAGAT GATGATGATG 781 ATGAAGAGGA GGAAGGATTA GAAGATATTG ACGAAGAAGG GGATGAGGAT GAAGGTGAAG 841 AAGATGAAGA TGATGATGAA GGGGAGGAAG GAGAGGAGGA TGAAGGAGAA GATGACTACC 901 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 961 aac