Construct: ORF ccsbBroadEn_01649

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014396.1_s300c1, BRDN0000389655
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TBXAS1 (6916)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6916 TBXAS1 thromboxane A synthase 1 NM_001166254.3 100% 100%
2 human 6916 TBXAS1 thromboxane A synthase 1 XM_024446901.1 96.1% 96.1% 0_1ins54
3 human 6916 TBXAS1 thromboxane A synthase 1 NM_001314028.3 90.6% 88.5% 1_115del;151_179del
4 human 6916 TBXAS1 thromboxane A synthase 1 NM_001061.7 87.4% 87.4% 1_201del
5 human 6916 TBXAS1 thromboxane A synthase 1 NM_001130966.4 87.4% 87.4% 1_201del
6 human 6916 TBXAS1 thromboxane A synthase 1 NM_001366537.2 85.9% 89.3% 1_115del;149_150ins97
7 human 6916 TBXAS1 thromboxane A synthase 1 NM_001166253.3 80.4% 80.4% 1_201del;451_588del
8 human 6916 TBXAS1 thromboxane A synthase 1 NM_030984.5 73.4% 72.7% (many diffs)
9 human 6916 TBXAS1 thromboxane A synthase 1 XM_011516544.3 73.4% 72.5% (many diffs)
10 human 6916 TBXAS1 thromboxane A synthase 1 XM_017012571.2 62.6% 58.6% (many diffs)
11 human 6916 TBXAS1 thromboxane A synthase 1 XM_017012572.2 62.1% 57.5% (many diffs)
12 human 6916 TBXAS1 thromboxane A synthase 1 XM_017012570.2 61.6% 56.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1464
ORF length:
1398
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GCTCAGAAAG CTGTATGGAC CTCTGTGTGG GTACTATCTT GGTCGTCGGA
121TGTTTATTGT TATTTCTGAG CCAGACATGA TCAAGCAGGT GTTGGTTGAG AACTTCAGTA
181ACTTTACCAA CAGAATGGCG TCGGGTTTGG AGTTCAAGTC GGTAGCCGAC AGCGTTCTGT
241TTTTACGTGA CAAAAGATGG GAAGAGGTCA GAGGTGCCCT GATGTCTGCT TTCAGTCCTG
301AAAAGCTGAA CGAGATGGTT CCCCTCATCA GCCAAGCCTG CGACCTTCTC CTGGCTCATT
361TAAAACGCTA TGCGGAATCT GGGGACGCAT TTGACATCCA GAGGTGCTAC TGCAATTACA
421CCACAGATGT GGTTGCCAGC GTCGCCTTTG GCACCCCGGT GGACTCCTGG CAGGCCCCTG
481AGGATCCCTT TGTGAAACAC TGCAAGCGTT TCTTCGAATT CTGCATCCCC AGACCTATCC
541TGGTTTTACT CTTATCATTT CCATCCATAA TGGTCCCACT GGCCCGGATT TTGCCCAATA
601AGAACCGAGA CGAACTGAAT GGCTTTTTTA ACAAACTCAT TAGGAATGTG ATTGCCTTGC
661GGGACCAGCA AGCTGCCGAA GAGAGGCGGA GAGACTTCCT CCAAATGGTC CTGGATGCCC
721GACATTCTGC AAGTCCCATG GGCGTGCAAG ACTTTGACAT CGTCAGAGAC GTTTTCTCCT
781CTACTGGGTG CAAGCCGAAC CCTTCCCGGC AACACCAGCC CAGCCCTATG GCCAGGCCTT
841TGACTGTGGA TGAGATTGTG GGCCAGGCCT TCATCTTCCT CATCGCTGGC TATGAAATCA
901TCACCAACAC ACTTTCTTTT GCCACCTACC TACTGGCCAC CAACCCTGAC TGCCAAGAGA
961AGCTTCTGAG AGAGGTAGAC GTTTTTAAGG AGAAACACAT GGCCCCTGAG TTCTGCAGCC
1021TCGAGGAAGG CCTGCCCTAT CTGGACATGG TGATTGCAGA GACGCTGAGG ATGTACCCGC
1081CAGCTTTCAG ATTCACACGG GAGGCAGCTC AGGACTGCGA GGTGCTGGGG CAGCGCATCC
1141CCGCAGGCGC TGTGCTAGAG ATGGCCGTGG GTGCCCTGCA CCATGACCCT GAGCACTGGC
1201CAAGCCCGGA GACCTTCAAC CCTGAAAGGT TCACGGCTGA GGCCCGGCAG CAGCACCGGC
1261CCTTCACGTA CCTGCCCTTC GGGGCCGGCC CACGGAGCTG CCTCGGGGTG CGTCTAGGGC
1321TGCTTGAGGT CAAGTTGACA CTGCTCCACG TGCTGCACAA GTTCCGGTTC CAAGCCTGCC
1381CTGAGACCCA GGTACCGCTG CAGCTAGAAT CCAAATCTGC CCTAGGTCCA AAAAATGGTG
1441TCTATATCAA GATCGTATCC CGCTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1501agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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