Construct: ORF ccsbBroadEn_01883

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016801.1_s300c1, BRDN0000388659
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
H4C9 (8294)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8294 H4C9 H4 clustered histone 9 NM_003495.2 100% 100%
2 human 8362 H4C12 H4 clustered histone 12 NM_003541.2 90.2% 100% (many diffs)
3 human 8363 H4C11 H4 clustered histone 11 NM_021968.3 90.2% 100% (many diffs)
4 human 8359 H4C1 H4 clustered histone 1 NM_003538.3 86% 100% (many diffs)
5 human 554313 H4C15 H4 clustered histone 15 NM_001034077.4 85.4% 100% (many diffs)
6 human 8370 H4C14 H4 clustered histone 14 NM_003548.2 85.4% 100% (many diffs)
7 human 8368 H4C13 H4 clustered histone 13 NM_003546.2 85.1% 100% (many diffs)
8 human 8361 H4C6 H4 clustered histone 6 NM_003540.3 84.8% 100% (many diffs)
9 human 8360 H4C4 H4 clustered histone 4 NM_003539.3 84.4% 100% (many diffs)
10 human 8366 H4C2 H4 clustered histone 2 NM_003544.2 84.4% 100% (many diffs)
11 human 8367 H4C5 H4 clustered histone 5 NM_003545.3 84.4% 100% (many diffs)
12 human 121504 H4-16 H4 histone 16 NM_175054.2 84.1% 100% (many diffs)
13 human 8365 H4C8 H4 clustered histone 8 NM_003543.3 83.1% 100% (many diffs)
14 human 8364 H4C3 H4 clustered histone 3 NM_003542.3 81.5% 100% (many diffs)
15 mouse 100041230 Hist1h4m histone cluster 1, H4m NM_001195421.1 90.2% 100% (many diffs)
16 mouse 319161 Hist1h4n histone cluster 1, H4n NM_175657.2 90.2% 100% (many diffs)
17 mouse 326619 Hist1h4a histone cluster 1, H4a NM_178192.2 89.6% 100% (many diffs)
18 mouse 326620 Hist1h4b histone cluster 1, H4b NM_178193.2 89.6% 100% (many diffs)
19 mouse 69386 Hist1h4h histone cluster 1, H4h NM_153173.4 88.9% 100% (many diffs)
20 mouse 319156 Hist1h4d histone cluster 1, H4d NM_175654.2 88.9% 100% (many diffs)
21 mouse 319158 Hist1h4i histone cluster 1, H4i NM_175656.3 88.9% 100% (many diffs)
22 mouse 319159 Hist1h4j histone cluster 1, H4j NM_178210.2 88.3% 100% (many diffs)
23 mouse 319160 Hist1h4k histone cluster 1, H4k NM_178211.2 88.3% 100% (many diffs)
24 mouse 319157 Hist1h4f histone cluster 1, H4f NM_175655.2 88% 100% (many diffs)
25 mouse 319155 Hist1h4c histone cluster 1, H4c NM_178208.2 88% 100% (many diffs)
26 mouse 320332 Hist4h4 histone cluster 4, H4 NM_175652.3 86.4% 100% (many diffs)
27 mouse 97122 Hist2h4 histone cluster 2, H4 NM_033596.3 85.4% 100% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
375
ORF length:
309
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC AGGACGCGGC AAAGGAGGTA AGGGCCTGGG GAAAGGGGGT GCCAAGCGCC
121ACCGCAAGGT GCTGCGCGAC AACATCCAGG GTATCACCAA GCCAGCCATT CGGCGCCTTG
181CTCGCCGCGG CGGCGTGAAG CGCATTTCTG GCCTCATCTA TGAGGAGACC CGCGGAGTGT
241TGAAGGTGTT CCTGGAGAAC GTGATCCGGG ACGCCGTGAC CTACACGGAG CACGCCAAGC
301GCAAGACGGT CACCGCCATG GACGTGGTCT ACGCGCTCAA GCGCCAGGGC CGCACCCTCT
361ATGGCTTCGG CGGCTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
421tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)