Construct: ORF ccsbBroadEn_01911
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002620.1_s300c1, BRDN0000390516
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- H4C6 (8361)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8361 | H4C6 | H4 clustered histone 6 | NM_003540.3 | 100% | 100% | |
| 2 | human | 8294 | H4C9 | H4 clustered histone 9 | NM_003495.2 | 84.8% | 100% | (many diffs) |
| 3 | human | 554313 | H4C15 | H4 clustered histone 15 | NM_001034077.4 | 84.1% | 100% | (many diffs) |
| 4 | human | 8370 | H4C14 | H4 clustered histone 14 | NM_003548.2 | 84.1% | 100% | (many diffs) |
| 5 | human | 8362 | H4C12 | H4 clustered histone 12 | NM_003541.2 | 83.8% | 100% | (many diffs) |
| 6 | human | 8363 | H4C11 | H4 clustered histone 11 | NM_021968.3 | 83.8% | 100% | (many diffs) |
| 7 | human | 8365 | H4C8 | H4 clustered histone 8 | NM_003543.3 | 83.4% | 100% | (many diffs) |
| 8 | human | 8366 | H4C2 | H4 clustered histone 2 | NM_003544.2 | 83.4% | 100% | (many diffs) |
| 9 | human | 8368 | H4C13 | H4 clustered histone 13 | NM_003546.2 | 83.4% | 100% | (many diffs) |
| 10 | human | 8359 | H4C1 | H4 clustered histone 1 | NM_003538.3 | 82.5% | 100% | (many diffs) |
| 11 | human | 8360 | H4C4 | H4 clustered histone 4 | NM_003539.3 | 81.5% | 100% | (many diffs) |
| 12 | human | 8367 | H4C5 | H4 clustered histone 5 | NM_003545.3 | 80.9% | 100% | (many diffs) |
| 13 | human | 8364 | H4C3 | H4 clustered histone 3 | NM_003542.3 | 80.2% | 100% | (many diffs) |
| 14 | human | 121504 | H4-16 | H4 histone 16 | NM_175054.2 | 80.2% | 100% | (many diffs) |
| 15 | mouse | 69386 | Hist1h4h | histone cluster 1, H4h | NM_153173.4 | 87% | 100% | (many diffs) |
| 16 | mouse | 100041230 | Hist1h4m | histone cluster 1, H4m | NM_001195421.1 | 86.4% | 100% | (many diffs) |
| 17 | mouse | 319161 | Hist1h4n | histone cluster 1, H4n | NM_175657.2 | 86.4% | 100% | (many diffs) |
| 18 | mouse | 319158 | Hist1h4i | histone cluster 1, H4i | NM_175656.3 | 86% | 100% | (many diffs) |
| 19 | mouse | 319159 | Hist1h4j | histone cluster 1, H4j | NM_178210.2 | 86% | 100% | (many diffs) |
| 20 | mouse | 326620 | Hist1h4b | histone cluster 1, H4b | NM_178193.2 | 85.7% | 100% | (many diffs) |
| 21 | mouse | 319160 | Hist1h4k | histone cluster 1, H4k | NM_178211.2 | 85.7% | 100% | (many diffs) |
| 22 | mouse | 319156 | Hist1h4d | histone cluster 1, H4d | NM_175654.2 | 85.1% | 100% | (many diffs) |
| 23 | mouse | 97122 | Hist2h4 | histone cluster 2, H4 | NM_033596.3 | 84.7% | 100% | (many diffs) |
| 24 | mouse | 319155 | Hist1h4c | histone cluster 1, H4c | NM_178208.2 | 84.5% | 100% | (many diffs) |
| 25 | mouse | 326619 | Hist1h4a | histone cluster 1, H4a | NM_178192.2 | 83.8% | 100% | (many diffs) |
| 26 | mouse | 320332 | Hist4h4 | histone cluster 4, H4 | NM_175652.3 | 83.1% | 100% | (many diffs) |
| 27 | mouse | 319157 | Hist1h4f | histone cluster 1, H4f | NM_175655.2 | 82.8% | 100% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 375
- ORF length:
- 309
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TGGTAGAGGC AAAGGTGGTA AAGGTTTAGG AAAGGGAGGC GCCAAGCGCC 121 ATCGCAAAGT GCTGCGTGAC AACATACAGG GCATCACGAA GCCCGCCATC CGTCGCTTGG 181 CCCGACGCGG CGGCGTGAAA CGCATTTCGG GCCTCATTTA TGAGGAGACC CGCGGTGTTC 241 TTAAGGTGTT CCTGGAGAAT GTGATACGGG ACGCCGTAAC CTACACGGAG CACGCCAAGC 301 GTAAGACAGT CACTGCAATG GATGTTGTCT ACGCGCTCAA GCGCCAGGGA CGCACTCTGT 361 ACGGCTTTGG TGGCTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 421 tatcaatttg ttgcaacgaa c