Construct: ORF ccsbBroadEn_02013

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011783.1_s300c1, BRDN0000388160
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNAP23 (8773)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8773 SNAP23 synaptosome associated prot... NM_003825.4 100% 100%
2 human 8773 SNAP23 synaptosome associated prot... XM_006720725.3 95% 95% 265_297del
3 human 8773 SNAP23 synaptosome associated prot... XM_017022693.2 91.7% 84.9% (many diffs)
4 human 8773 SNAP23 synaptosome associated prot... XM_017022694.1 91.7% 84.9% (many diffs)
5 human 8773 SNAP23 synaptosome associated prot... XM_017022692.2 87.4% 81% (many diffs)
6 human 8773 SNAP23 synaptosome associated prot... NM_130798.2 74.8% 74.4% 265_266ins159
7 mouse 20619 Snap23 synaptosomal-associated pro... NM_001177793.1 88.3% 87.2% (many diffs)
8 mouse 20619 Snap23 synaptosomal-associated pro... NM_009222.3 88.3% 87.2% (many diffs)
9 mouse 20619 Snap23 synaptosomal-associated pro... XM_006499057.3 88.3% 87.2% (many diffs)
10 mouse 20619 Snap23 synaptosomal-associated pro... NM_001177792.1 84.1% 82.8% (many diffs)
11 mouse 20619 Snap23 synaptosomal-associated pro... XM_006499054.3 84.1% 82.8% (many diffs)
12 mouse 20619 Snap23 synaptosomal-associated pro... XM_006499055.3 84.1% 82.8% (many diffs)
13 mouse 20619 Snap23 synaptosomal-associated pro... XM_006499056.3 84.1% 82.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
699
ORF length:
633
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA TAATCTGTCA TCAGAAGAAA TTCAACAGAG AGCTCACCAG ATTACTGATG
121AGTCTCTGGA AAGTACGAGG AGAATCCTGG GTTTAGCCAT TGAGTCTCAG GATGCAGGAA
181TCAAGACCAT CACTATGCTG GATGAACAAA AGGAACAACT AAACCGCATA GAAGAAGGCT
241TGGACCAAAT AAATAAGGAC ATGAGAGAGA CAGAGAAGAC TTTAACAGAA CTCAACAAAT
301GCTGTGGCCT TTGTGTCTGC CCATGTAATA GAACAAAGAA CTTTGAGTCT GGCAAGGCTT
361ATAAGACAAC ATGGGGAGAT GGTGGAGAAA ACTCACCTTG CAATGTAGTA TCTAAACAGC
421CAGGCCCGGT GACAAATGGT CAGCTTCAGC AACCAACAAC GGGAGCAGCC AGTGGTGGAT
481ACATTAAACG CATAACTAAT GATGCCAGAG AAGATGAAAT GGAAGAGAAC CTGACTCAAG
541TGGGCAGTAT CCTGGGAAAT CTAAAAGACA TGGCCCTGAA CATAGGCAAT GAGATTGATG
601CTCAAAATCC ACAAATAAAA CGAATCACAG ACAAGGCTGA CACCAACAGA GATCGTATTG
661ATATTGCCAA TGCCAGAGCA AAGAAACTCA TTGACAGCTA TCCAACTTTC TTGTACAAAG
721Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)