Construct: ORF ccsbBroadEn_02226

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015078.1_s300c1, BRDN0000390757
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DEPDC5 (9681)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9681 DEPDC5 DEP domain containing 5, GA... NM_001007188.3 100% 100%
2 human 9681 DEPDC5 DEP domain containing 5, GA... XM_017029115.1 85.8% 85.6% 1668_1670delTGTinsGCA;1673_1674insA;1677_1947del
3 human 9681 DEPDC5 DEP domain containing 5, GA... XM_017029114.1 77.8% 77.6% 1668_1670delTGTinsGCA;1673_1674insA;1677_2148del
4 human 9681 DEPDC5 DEP domain containing 5, GA... XM_017029113.1 76.6% 76.4% 1668_1670delTGTinsGCA;1673_1674insA;1677_2181del
5 human 9681 DEPDC5 DEP domain containing 5, GA... XM_011530568.2 47.4% 47.2% 1668_1670delTGTinsGCA;1673_1674insA;1677_3528del
6 human 9681 DEPDC5 DEP domain containing 5, GA... XM_011530565.2 42.6% 42.5% 1668_1670delTGTinsGCA;1673_1674insA;1677_3921del
7 human 9681 DEPDC5 DEP domain containing 5, GA... NM_001242897.2 37% 36.9% 1668_1670delTGTinsGCA;1673_1674insA;1677_4509del
8 human 9681 DEPDC5 DEP domain containing 5, GA... XM_011530563.2 37% 36.9% 1668_1670delTGTinsGCA;1673_1674insA;1677_4509del
9 human 9681 DEPDC5 DEP domain containing 5, GA... XM_011530562.2 36.8% 36.6% 1668_1670delTGTinsGCA;1673_1674insA;1677_4545del
10 human 9681 DEPDC5 DEP domain containing 5, GA... XM_011530561.2 36.7% 36.6% 1668_1670delTGTinsGCA;1673_1674insA;1677_4548del
11 human 9681 DEPDC5 DEP domain containing 5, GA... NM_001363854.2 36.5% 36.4% 1668_1670delTGTinsGCA;1673_1674insA;1677_4575del
12 human 9681 DEPDC5 DEP domain containing 5, GA... NM_001364319.1 36.5% 36.4% 1668_1670delTGTinsGCA;1673_1674insA;1677_4575del
13 human 9681 DEPDC5 DEP domain containing 5, GA... NM_001369903.1 35.4% 35.3% 1668_1670delTGTinsGCA;1673_1674insA;1677_4716del
14 human 9681 DEPDC5 DEP domain containing 5, GA... NM_014662.5 35.4% 35.3% 1668_1670delTGTinsGCA;1673_1674insA;1677_4716del
15 human 9681 DEPDC5 DEP domain containing 5, GA... NM_001363852.2 35.2% 35.1% 1668_1670delTGTinsGCA;1673_1674insA;1677_4743del
16 human 9681 DEPDC5 DEP domain containing 5, GA... NM_001364320.1 35.2% 35.1% 1668_1670delTGTinsGCA;1673_1674insA;1677_4743del
17 human 9681 DEPDC5 DEP domain containing 5, GA... NM_001136029.3 34.9% 34.8% 1668_1670delTGTinsGCA;1673_1674insA;1677_4782del
18 human 9681 DEPDC5 DEP domain containing 5, GA... XM_011530557.2 34.9% 34.8% 1668_1670delTGTinsGCA;1673_1674insA;1677_4782del
19 human 9681 DEPDC5 DEP domain containing 5, GA... NM_001242896.3 34.7% 34.6% 1668_1670delTGTinsGCA;1673_1674insA;1677_4809del
20 human 9681 DEPDC5 DEP domain containing 5, GA... NM_001364318.1 34.7% 34.6% 1668_1670delTGTinsGCA;1673_1674insA;1677_4809del
21 human 9681 DEPDC5 DEP domain containing 5, GA... NM_001369901.1 33% 32.9% (many diffs)
22 human 9681 DEPDC5 DEP domain containing 5, GA... NM_001369902.1 33% 32.9% (many diffs)
23 human 9681 DEPDC5 DEP domain containing 5, GA... NR_157126.1 32.8% (many diffs)
24 human 9681 DEPDC5 DEP domain containing 5, GA... NR_110988.2 32.6% (many diffs)
25 human 9681 DEPDC5 DEP domain containing 5, GA... XR_937973.2 32.3% (many diffs)
26 human 9681 DEPDC5 DEP domain containing 5, GA... NR_157125.1 31.8% (many diffs)
27 human 9681 DEPDC5 DEP domain containing 5, GA... NR_157128.1 31.2% (many diffs)
28 human 9681 DEPDC5 DEP domain containing 5, GA... NR_146296.2 30.4% (many diffs)
29 human 9681 DEPDC5 DEP domain containing 5, GA... XR_001755390.1 29.8% (many diffs)
30 human 9681 DEPDC5 DEP domain containing 5, GA... XR_001755389.1 27.2% (many diffs)
31 mouse 277854 Depdc5 DEP domain containing 5 NM_177786.4 47.3% 49.6% (many diffs)
32 mouse 277854 Depdc5 DEP domain containing 5 XM_017320910.1 45.4% 47.6% (many diffs)
33 mouse 277854 Depdc5 DEP domain containing 5 NM_001025426.2 33.5% 35.2% (many diffs)
34 mouse 277854 Depdc5 DEP domain containing 5 XM_006503987.3 32.7% 34.3% (many diffs)
35 mouse 277854 Depdc5 DEP domain containing 5 XM_006503985.3 32.5% 34.1% (many diffs)
36 mouse 277854 Depdc5 DEP domain containing 5 XM_006503986.3 32.5% 34.1% (many diffs)
37 mouse 277854 Depdc5 DEP domain containing 5 NM_001170567.1 32.2% 33.8% (many diffs)
38 mouse 277854 Depdc5 DEP domain containing 5 XM_006503984.3 32.2% 33.8% (many diffs)
39 mouse 277854 Depdc5 DEP domain containing 5 XM_006503978.3 32.1% 33.6% (many diffs)
40 mouse 277854 Depdc5 DEP domain containing 5 XM_006503979.3 32.1% 33.6% (many diffs)
41 mouse 277854 Depdc5 DEP domain containing 5 XM_006503980.3 32.1% 33.6% (many diffs)
42 mouse 277854 Depdc5 DEP domain containing 5 XM_006503981.3 32.1% 33.6% (many diffs)
43 mouse 277854 Depdc5 DEP domain containing 5 XM_006503982.3 32.1% 33.6% (many diffs)
44 mouse 277854 Depdc5 DEP domain containing 5 XM_006503983.3 32.1% 33.6% (many diffs)
45 mouse 277854 Depdc5 DEP domain containing 5 XM_017320908.1 32.1% 33.6% (many diffs)
46 mouse 277854 Depdc5 DEP domain containing 5 XM_006503989.3 22.7% 23.6% (many diffs)
47 mouse 277854 Depdc5 DEP domain containing 5 XM_006503988.3 22.3% 23.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1743
ORF length:
1677
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG AACAACAAAG GTCTACAAAC TCGTCATCCA CAAGAAGGGC TTTGGGGGCA
121GTGATGATGA GCTAGTTGTG AACCCCAAAG TGTTCCCTCA CATCAAGCTT GGAGACATTG
181TAGAGATTGC ACACCCCAAC GATGAATACA GCCCTCTGCT TTTGCAGGTC AAGTCTCTTA
241AGGAAGATTT ACAGAAGGAA ACTATCAGTG TGGACCAGAC TGTGACTCAA GTGTTCCGGC
301TGAGACCTTA TCAGGATGTC TATGTTAATG TCGTAGACCC TAAGGATGTG ACCCTTGACC
361TAGTGGAATT AACTTTTAAG GATCAGTATA TTGGCCGTGG GGATATGTGG CGACTAAAGA
421AAAGTTTGGT CAGCACATGT GCCTATATCA CCCAGAAGGT GGAGTTTGCT GGCATCAGAG
481CACAGGCTGG TGAACTGTGG GTTAAGAATG AGAAGGTCAT GTGTGGCTAC ATCAGTGAAG
541ATACCAGGGT GGTGTTTCGT TCTACGTCGG CTATGGTTTA CATATTTATT CAGATGAGCT
601GTGAAATGTG GGATTTTGAT ATTTATGGGG ATTTGTATTT TGAGAAAGCT GTGAATGGTT
661TCCTTGCTGA TCTATTTACC AAGTGGAAGG AGAAGAACTG TAGTCATGAA GTGACAGTGG
721TCCTGTTTTC TAGAACTTTC TATGATGCAA AATCTGTTGA TGAATTTCCT GAAATAAACC
781GAGCCTCAAT TCGACAGGAT CACAAGGGGA GATTCTATGA AGACTTTTAC AAAGTGGTGG
841TGCAGAATGA GAGAAGAGAA GAATGGACTT CACTTCTCGT AACCATTAAA AAACTCTTCA
901TCCAGTATCC AGTGTTGGTG CGACTGGAAC AGGCAGAGGG CTTTCCTCAA GGAGATAATT
961CTACCTCAGC ACAAGGAAAC TACCTGGAGG CCATCAATCT GTCATTCAAT GTGTTTGATA
1021AGCACTACAT CAACCGCAAC TTTGACCGAA CTGGGCAGAT GTCAGTGGTG ATCACGCCCG
1081GGGTGGGTGT CTTTGAAGTG GACCGCCTAC TCATGATCCT GACCAAGCAG CGGATGATAG
1141ATAATGGAAT TGGTGTGGAT TTGGTGTGCA TGGGAGAGCA ACCGTTACAT GCTGTCCCAT
1201TGTTCAAGCT CCATAATCGG AGTGCTCCCC GTGATTCTCG TCTGGGCGAT GACTATAATA
1261TCCCTCACTG GATAAACCAC AGTTTCTACA CATCCAAAAG CCAGCTCTTT TGTAATAGTT
1321TCACCCCACG AATAAAACTG GCAGGAAAGA AGCCCGCCTC TGAGAAAGCA AAAAATGGCC
1381GTGATACATC TCTCGGGAGT CCAAAAGAAT CTGAGAACGC CCTTCCCATC CAAGTAGATT
1441ATGACGCCTA TGACGCTCAA GTGTTCAGGC TGCCCGGCCC ATCCCGGGCC CAGTGCCTCA
1501CCACCTGCAG ATCTGTGCGA GAGCGAGAGA GTCACAGTCG AAAGAGTGCC AGCTCCTGTG
1561ATGTTTCATC CAGCCCTTCC CTACCAAGCC GCACACTGCC CACTGAGGAA GTGAGGAGCC
1621AGGCTTCTGA CGACAGCTCC CTAGGCAAGA GTGCCAACAT CCTGATGATC CCACACCCCC
1681ACCTGCACCA GTATGAAGTC AGCAGCTCCT TGGGATACAC CAGCACTCGA GAGCACCTAG
1741GATACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1801gcaacgaac

Download FASTA (ORF) (Full)