Construct: ORF ccsbBroadEn_02304
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004089.1_s300c1, BRDN0000396539
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNUPN (10073)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10073 | SNUPN | snurportin 1 | NM_001042581.1 | 100% | 100% | |
| 2 | human | 10073 | SNUPN | snurportin 1 | NM_001042588.1 | 100% | 100% | |
| 3 | human | 10073 | SNUPN | snurportin 1 | NM_005701.4 | 100% | 100% | |
| 4 | mouse | 66069 | Snupn | snurportin 1 | NM_178374.3 | 88.6% | 91.7% | (many diffs) |
| 5 | mouse | 66069 | Snupn | snurportin 1 | XM_011242784.2 | 88.6% | 91.7% | (many diffs) |
| 6 | mouse | 66069 | Snupn | snurportin 1 | XM_006511336.1 | 70.6% | 72.6% | (many diffs) |
| 7 | mouse | 66069 | Snupn | snurportin 1 | XM_017313505.1 | 51.4% | 49.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1146
- ORF length:
- 1080
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA AGAGTTGAGT CAGGCCCTGG CTAGTAGCTT TTCTGTGTCT CAAGATCTGA 121 ACAGCACAGC TGCCCCACAC CCCCGCCTAT CCCAGTACAA GTCCAAGTAC AGTTCCTTGG 181 AGCAGAGTGA GCGCCGCCGG AGGTTACTGG AACTGCAGAA ATCCAAGCGG CTGGATTATG 241 TGAACCATGC CAGAAGACTG GCTGAAGATG ACTGGACAGG GATGGAGAGT GAGGAAGAAA 301 ATAAGAAAGA TGATGAAGAA ATGGACATTG ACACTGTCAA GAAGTTACCA AAACACTATG 361 CTAATCAATT GATGCTTTCT GAGTGGTTAA TTGACGTTCC TTCAGATTTG GGGCAGGAAT 421 GGATTGTGGT CGTGTGCCCT GTTGGAAAAA GAGCCCTTAT CGTGGCCTCC AGGGGTTCTA 481 CCAGTGCCTA CACCAAGAGT GGCTACTGTG TCAACAGGTT TTCTTCACTT CTGCCAGGAG 541 GCAACAGGCG AAACTCAACA GCAAAAGACT ACACCATTCT AGATTGCATT TACAATGAGG 601 TAAACCAGAC CTACTACGTT CTGGATGTGA TGTGCTGGCG GGGACACCCT TTTTATGATT 661 GCCAGACTGA TTTCCGATTC TACTGGATGC ATTCAAAGTT ACCAGAAGAA GAAGGACTGG 721 GAGAGAAAAC CAAGCTTAAT CCTTTTAAAT TTGTGGGGCT AAAGAACTTC CCTTGCACTC 781 CCGAAAGCCT GTGTGATGTG CTATCTATGG ATTTCCCTTT TGAGGTAGAT GGACTTCTCT 841 TCTACCACAA ACAGACCCAC TACAGCCCCG GAAGCACTCC CTTGGTGGGC TGGCTGCGCC 901 CCTACATGGT GTCAGATGTC CTTGGTGTAG CTGTGCCGGC TGGCCCGCTG ACCACCAAGC 961 CAGACTATGC TGGGCACCAG CTCCAGCAGA TTATGGAGCA CAAGAAGAGC CAGAAGGAAG 1021 GCATGAAGGA GAAACTCACA CACAAGGCCT CTGAGAATGG GCACTATGAA TTGGAGCACC 1081 TGTCTACTCC CAAGTTGAAG GGTTCTTCCC ATAGCCCAGA CCACCCTGGA TGCCTCATGG 1141 AGAATTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 1201 gttgcaacga ac