Construct: ORF ccsbBroadEn_02365

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010839.1_s300c1, BRDN0000391777
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HNRNPR (10236)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10236 HNRNPR heterogeneous nuclear ribon... NM_001102398.3 100% 100%
2 human 10236 HNRNPR heterogeneous nuclear ribon... XM_011540471.3 100% 100%
3 human 10236 HNRNPR heterogeneous nuclear ribon... NM_005826.5 99.5% 99.5% 807_808insACAGGTTTA
4 human 10236 HNRNPR heterogeneous nuclear ribon... XM_005245711.5 99.5% 99.5% 807_808insACAGGTTTA
5 human 10236 HNRNPR heterogeneous nuclear ribon... XM_011540474.3 94% 94% 382_383ins114
6 human 10236 HNRNPR heterogeneous nuclear ribon... XM_011540475.3 94% 94% 382_383ins114
7 human 10236 HNRNPR heterogeneous nuclear ribon... NM_001297620.2 93.5% 93.5% 382_383ins114;693_694insACAGGTTTA
8 human 10236 HNRNPR heterogeneous nuclear ribon... XM_017000008.2 93.5% 93.5% 382_383ins114;693_694insACAGGTTTA
9 human 10236 HNRNPR heterogeneous nuclear ribon... XM_011540472.3 90.7% 90.7% 497_498ins177
10 human 10236 HNRNPR heterogeneous nuclear ribon... XM_017000009.2 90.2% 90.2% 497_498ins177;630_631insACAGGTTTA
11 human 10236 HNRNPR heterogeneous nuclear ribon... XM_017000010.2 90.2% 90.2% 497_498ins177;630_631insACAGGTTTA
12 human 10236 HNRNPR heterogeneous nuclear ribon... NM_001102399.3 84.1% 84.1% 0_1ins303
13 human 10236 HNRNPR heterogeneous nuclear ribon... NM_001102397.3 83.6% 83.6% 0_1ins303;504_505insACAGGTTTA
14 human 10236 HNRNPR heterogeneous nuclear ribon... XM_011540476.3 78.1% 78.1% 0_1ins303;79_80ins114
15 human 10236 HNRNPR heterogeneous nuclear ribon... NM_001297622.2 77.6% 77.6% 0_1ins303;79_80ins114;390_391insACAGGTTTA
16 human 10236 HNRNPR heterogeneous nuclear ribon... XM_011540477.3 74.8% 74.8% 0_1ins303;194_195ins177
17 human 10236 HNRNPR heterogeneous nuclear ribon... NM_001297621.2 74.3% 74.3% 0_1ins303;194_195ins177;327_328insACAGGTTTA
18 mouse 74326 Hnrnpr heterogeneous nuclear ribon... XM_006539221.1 94% 99.5% (many diffs)
19 mouse 74326 Hnrnpr heterogeneous nuclear ribon... XM_006539222.1 94% 99.5% (many diffs)
20 mouse 74326 Hnrnpr heterogeneous nuclear ribon... XM_006539223.3 94% 99.5% (many diffs)
21 mouse 74326 Hnrnpr heterogeneous nuclear ribon... XM_006539224.3 94% 99.5% (many diffs)
22 mouse 74326 Hnrnpr heterogeneous nuclear ribon... NM_001277121.1 93.5% 99% (many diffs)
23 mouse 74326 Hnrnpr heterogeneous nuclear ribon... NM_028871.2 93.5% 99% (many diffs)
24 mouse 74326 Hnrnpr heterogeneous nuclear ribon... XM_017320416.1 93.5% 99% (many diffs)
25 mouse 74326 Hnrnpr heterogeneous nuclear ribon... XM_006539225.3 78.6% 83.6% (many diffs)
26 mouse 74326 Hnrnpr heterogeneous nuclear ribon... XM_006539226.1 78.6% 83.6% (many diffs)
27 mouse 74326 Hnrnpr heterogeneous nuclear ribon... XM_006539227.1 78.6% 83.6% (many diffs)
28 mouse 74326 Hnrnpr heterogeneous nuclear ribon... XM_006539228.3 78.6% 83.6% (many diffs)
29 mouse 74326 Hnrnpr heterogeneous nuclear ribon... NM_001277122.1 78.2% 83.1% (many diffs)
30 mouse 74326 Hnrnpr heterogeneous nuclear ribon... NM_001277123.1 78.2% 83.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1974
ORF length:
1908
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TAATCAGGTG AATGGTAATG CGGTACAGTT AAAAGAAGAG GAAGAACCAA
121TGGATACTTC CAGTGTAACT CACACAGAAC ACTACAAGAC ACTGATAGAG GCAGGCCTCC
181CACAGAAGGT GGCAGAAAGA CTTGATGAAA TATTTCAGAC AGGATTGGTA GCTTATGTCG
241ATCTTGATGA AAGAGCAATT GATGCTCTCA GGGAATTTAA TGAAGAAGGA GCTCTGTCTG
301TACTACAGCA GTTCAAGGAA AGTGACTTAT CACATGTTCA GAACAAAAGT GCATTTTTAT
361GTGGAGTTAT GAAGACCTAC AGGCAGAGAG AGAAACAGGG GAGCAAGGTG CAAGAGTCCA
421CAAAGGGACC TGATGAAGCG AAGATCAAGG CCTTGCTTGA GAGAACTGGT TATACTCTGG
481ATGTAACCAC AGGACAGAGG AAGTATGGTG GTCCTCCACC AGACAGTGTG TACTCTGGCG
541TGCAACCTGG AATTGGAACG GAGGTATTTG TAGGCAAAAT ACCAAGGGAT TTATATGAGG
601ATGAGTTGGT GCCCCTTTTT GAGAAGGCCG GACCCATTTG GGATCTACGT CTTATGATGG
661ATCCACTGTC CGGTCAGAAT AGAGGGTATG CATTTATCAC CTTCTGTGGA AAGGAAGCTG
721CACAGGAAGC CGTGAAACTG TGTGACAGCT ATGAAATTCG CCCTGGTAAA CACCTTGGAG
781TGTGCATTTC TGTGGCAAAC AACAGACTTT TTGTTGGATC CATTCCGAAG AATAAGACTA
841AAGAAAACAT TTTGGAAGAA TTCAGTAAAG TCACAGGTTT AACAGAGGGT TTGGTGGACG
901TTATTCTCTA TCATCAACCC GATGACAAAA AGAAGAATCG GGGGTTCTGC TTCCTTGAAT
961ATGAGGATCA CAAGTCAGCA GCACAAGCCA GACGCCGGCT GATGAGTGGA AAAGTAAAAG
1021TGTGGGGAAA TGTAGTTACA GTTGAATGGG CTGACCCTGT GGAAGAACCA GATCCAGAAG
1081TCATGGCTAA GGTAAAAGTT TTGTTTGTGA GAAACTTGGC TACTACGGTG ACAGAAGAAA
1141TATTGGAAAA GTCATTTTCT GAATTTGGAA AACTCGAAAG AGTAAAGAAG TTGAAAGATT
1201ATGCATTTGT TCATTTTGAA GACAGAGGAG CAGCTGTTAA GGCTATGGAT GAAATGAATG
1261GCAAAGAAAT AGAAGGGGAA GAAATTGAAA TAGTCTTAGC CAAGCCACCA GACAAGAAAA
1321GGAAAGAGCG CCAAGCTGCT AGACAGGCCT CCAGAAGCAC TGCGTATGAA GATTATTACT
1381ACCACCCTCC TCCTCGCATG CCACCTCCAA TTAGAGGTCG GGGTCGTGGT GGGGGGAGAG
1441GTGGATATGG CTACCCTCCA GATTACTACG GCTATGAAGA TTACTATGAT GATTACTATG
1501GTTATGATTA TCACGACTAT CGTGGAGGCT ATGAAGATCC CTACTACGGC TATGATGATG
1561GCTATGCAGT AAGAGGAAGA GGAGGAGGAA GGGGAGGGCG AGGTGCTCCA CCACCACCAA
1621GGGGGAGGGG AGCACCACCT CCAAGAGGTA GAGCTGGCTA TTCACAGAGG GGGGCACCTT
1681TGGGACCACC AAGAGGCTCT AGGGGTGGCA GAGGGGGTCC TGCTCAACAG CAGAGAGGCC
1741GTGGTTCCCG TGGATCTCGG GGCAATCGTG GGGGCAATGT AGGAGGCAAG AGAAAGGCAG
1801ATGGGTACAA CCAGCCTGAT TCCAAGCGTC GTCAGACCAA CAACCAACAG AACTGGGGTT
1861CCCAACCCAT CGCTCAGCAG CCGCTTCAGC AAGGTGGTGA CTATTCTGGT AACTATGGTT
1921ACAATAATGA CAACCAGGAA TTTTATCAGG ATACTTATGG GCAACAGTGG AAGTACCCAA
1981CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)