Transcript: Mouse XM_006539223.3

PREDICTED: Mus musculus heterogeneous nuclear ribonucleoprotein R (Hnrnpr), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Hnrnpr (74326)
Length:
3214
CDS:
654..2561

Additional Resources:

NCBI RefSeq record:
XM_006539223.3
NBCI Gene record:
Hnrnpr (74326)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006539223.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000112076 GCACTGCGTATGAAGATTATT pLKO.1 1945 CDS 100% 15.000 21.000 N Hnrnpr n/a
2 TRCN0000308980 GCACTGCGTATGAAGATTATT pLKO_005 1945 CDS 100% 15.000 21.000 N Hnrnpr n/a
3 TRCN0000112075 GCGTAACTGTTTCATCTTTAA pLKO.1 2634 3UTR 100% 13.200 18.480 N Hnrnpr n/a
4 TRCN0000308978 GCGTAACTGTTTCATCTTTAA pLKO_005 2634 3UTR 100% 13.200 18.480 N Hnrnpr n/a
5 TRCN0000001241 GACGTTATTCTCTATCATCAA pLKO.1 1485 CDS 100% 4.950 6.930 N HNRNPR n/a
6 TRCN0000293488 GACGTTATTCTCTATCATCAA pLKO_005 1485 CDS 100% 4.950 6.930 N HNRNPR n/a
7 TRCN0000112077 CGATGCTCTCAGGGAGTTTAA pLKO.1 848 CDS 100% 13.200 9.240 N Hnrnpr n/a
8 TRCN0000308981 CGATGCTCTCAGGGAGTTTAA pLKO_005 848 CDS 100% 13.200 9.240 N Hnrnpr n/a
9 TRCN0000235504 GAGGGTTTGGTGGACGTTATT pLKO_005 1473 CDS 100% 13.200 9.240 N HNRNPR n/a
10 TRCN0000112079 CAAGAGGTAGAGCTGGCTATT pLKO.1 2227 CDS 100% 10.800 7.560 N Hnrnpr n/a
11 TRCN0000331893 CAAGAGGTAGAGCTGGCTATT pLKO_005 2227 CDS 100% 10.800 7.560 N Hnrnpr n/a
12 TRCN0000001240 GAACACTACAAGACACTGATA pLKO.1 735 CDS 100% 4.950 3.465 N HNRNPR n/a
13 TRCN0000112078 GAAGATCCCTACTACGGCTAT pLKO.1 2118 CDS 100% 4.050 2.835 N Hnrnpr n/a
14 TRCN0000308914 GAAGATCCCTACTACGGCTAT pLKO_005 2118 CDS 100% 4.050 2.835 N Hnrnpr n/a
15 TRCN0000001238 CTCTTGGACATTATTGGGCTT pLKO.1 2743 3UTR 100% 2.160 1.512 N HNRNPR n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006539223.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02365 pDONR223 100% 94% 99.5% None (many diffs) n/a
2 ccsbBroad304_02365 pLX_304 0% 94% 99.5% V5 (many diffs) n/a
3 TRCN0000466686 CACGCCATCGCACTAAAGTCCACA pLX_317 17% 94% 99.5% V5 (many diffs) n/a
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