Transcript: Human XM_011540471.3

PREDICTED: Homo sapiens heterogeneous nuclear ribonucleoprotein R (HNRNPR), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
HNRNPR (10236)
Length:
2693
CDS:
100..2010

Additional Resources:

NCBI RefSeq record:
XM_011540471.3
NBCI Gene record:
HNRNPR (10236)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011540471.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235502 ACGGCTATGAAGATTACTATG pLKO_005 1502 CDS 100% 10.800 15.120 N HNRNPR n/a
2 TRCN0000001241 GACGTTATTCTCTATCATCAA pLKO.1 931 CDS 100% 4.950 6.930 N HNRNPR n/a
3 TRCN0000293488 GACGTTATTCTCTATCATCAA pLKO_005 931 CDS 100% 4.950 6.930 N HNRNPR n/a
4 TRCN0000001242 GTAGCTTATGTCGATCTTGAT pLKO.1 262 CDS 100% 4.950 6.930 N HNRNPR n/a
5 TRCN0000112078 GAAGATCCCTACTACGGCTAT pLKO.1 1567 CDS 100% 4.050 5.670 N Hnrnpr n/a
6 TRCN0000308914 GAAGATCCCTACTACGGCTAT pLKO_005 1567 CDS 100% 4.050 5.670 N Hnrnpr n/a
7 TRCN0000235504 GAGGGTTTGGTGGACGTTATT pLKO_005 919 CDS 100% 13.200 10.560 N HNRNPR n/a
8 TRCN0000112079 CAAGAGGTAGAGCTGGCTATT pLKO.1 1676 CDS 100% 10.800 8.640 N Hnrnpr n/a
9 TRCN0000331893 CAAGAGGTAGAGCTGGCTATT pLKO_005 1676 CDS 100% 10.800 8.640 N Hnrnpr n/a
10 TRCN0000001238 CTCTTGGACATTATTGGGCTT pLKO.1 2196 3UTR 100% 2.160 1.728 N HNRNPR n/a
11 TRCN0000112076 GCACTGCGTATGAAGATTATT pLKO.1 1391 CDS 100% 15.000 10.500 N Hnrnpr n/a
12 TRCN0000308980 GCACTGCGTATGAAGATTATT pLKO_005 1391 CDS 100% 15.000 10.500 N Hnrnpr n/a
13 TRCN0000235503 CATTTGGGATCTACGTCTTAT pLKO_005 669 CDS 100% 13.200 9.240 N HNRNPR n/a
14 TRCN0000235506 TTATCGTTTCAGGCTTCATTT pLKO_005 2251 3UTR 100% 13.200 9.240 N HNRNPR n/a
15 TRCN0000001240 GAACACTACAAGACACTGATA pLKO.1 181 CDS 100% 4.950 3.465 N HNRNPR n/a
16 TRCN0000001239 CCAAGGGATTTATATGAGGAT pLKO.1 616 CDS 100% 2.640 1.848 N HNRNPR n/a
17 TRCN0000235505 GCTTGAGAGAACTGGTTATAC pLKO_005 489 CDS 100% 13.200 7.920 N HNRNPR n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011540471.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02365 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02365 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000466686 CACGCCATCGCACTAAAGTCCACA pLX_317 17% 100% 100% V5 n/a
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