Construct: ORF ccsbBroadEn_02417
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002032.1_s300c1, BRDN0000395986
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BTN3A3 (10384)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 10384 | BTN3A3 | butyrophilin subfamily 3 me... | NM_006994.5 | 100% | 100% | |
2 | human | 10384 | BTN3A3 | butyrophilin subfamily 3 me... | NM_197974.3 | 91.6% | 91.6% | 0_1ins126;790_791ins21 |
3 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | NM_007048.6 | 79.3% | 74.8% | (many diffs) |
4 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | XM_005248833.2 | 78.5% | 73.9% | (many diffs) |
5 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | NM_001145008.2 | 70.9% | 67.1% | (many diffs) |
6 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | XM_006714983.3 | 64.1% | 60.4% | (many diffs) |
7 | human | 10384 | BTN3A3 | butyrophilin subfamily 3 me... | NM_001242803.2 | 64% | 63.8% | 0_1ins126;307_308ins504 |
8 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | NM_001145009.2 | 57.7% | 49.8% | (many diffs) |
9 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | NM_001197246.2 | 54.3% | 52% | (many diffs) |
10 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | NM_001197247.3 | 54.3% | 52% | (many diffs) |
11 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | NM_007047.5 | 54.3% | 52% | (many diffs) |
12 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_005248827.4 | 54.3% | 52% | (many diffs) |
13 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_017010211.1 | 54.3% | 52% | (many diffs) |
14 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_017010212.1 | 54.3% | 52% | (many diffs) |
15 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | NM_194441.3 | 54.2% | 49.1% | (many diffs) |
16 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | XM_005248834.4 | 54.2% | 49.1% | (many diffs) |
17 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_006714979.4 | 53.9% | 51.6% | (many diffs) |
18 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_006714980.4 | 53.9% | 51.6% | (many diffs) |
19 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_006714981.4 | 53.9% | 51.6% | (many diffs) |
20 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_011514267.3 | 53.9% | 51.6% | (many diffs) |
21 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | NM_001197248.2 | 49.2% | 47.4% | (many diffs) |
22 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | NM_001197249.2 | 47.2% | 45% | (many diffs) |
23 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_017010214.2 | 47.2% | 45% | (many diffs) |
24 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_006714982.4 | 46.8% | 44.6% | (many diffs) |
25 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_011514269.3 | 46.8% | 44.6% | (many diffs) |
26 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_017010213.2 | 46.8% | 44.6% | (many diffs) |
27 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_005248831.4 | 43.7% | 41.9% | (many diffs) |
28 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_005248832.4 | 43.7% | 41.9% | (many diffs) |
29 | human | 11119 | BTN3A1 | butyrophilin subfamily 3 me... | XR_926039.3 | 42.6% | (many diffs) | |
30 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_011514270.3 | 39.1% | 37.3% | (many diffs) |
31 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_011514271.2 | 39.1% | 37.3% | (many diffs) |
32 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_017010215.2 | 39.1% | 37.3% | (many diffs) |
33 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_017010216.2 | 36.6% | 34.9% | (many diffs) |
34 | human | 11118 | BTN3A2 | butyrophilin subfamily 3 me... | XM_017010217.2 | 32% | 30.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1818
- ORF length:
- 1752
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA AATGGCAAGT TCCCTGGCTT TCCTTCTGCT CAACTTTCAT GTCTCCCTCT 121 TCTTGGTCCA GCTGCTCACT CCTTGCTCAG CTCAGTTTTC TGTGCTTGGA CCCTCTGGGC 181 CCATCCTGGC CATGGTGGGT GAAGACGCTG ATCTGCCCTG TCACCTGTTC CCGACCATGA 241 GTGCAGAGAC CATGGAGCTG AGGTGGGTGA GTTCCAGCCT AAGGCAGGTG GTGAACGTGT 301 ATGCAGATGG AAAGGAAGTG GAAGACAGGC AGAGTGCACC GTATCGAGGG AGAACTTCGA 361 TTCTGCGGGA TGGCATCACT GCAGGGAAGG CTGCTCTCCG AATACACAAC GTCACAGCCT 421 CTGACAGTGG AAAGTACTTG TGTTATTTCC AAGATGGTGA CTTCTACGAA AAAGCCCTGG 481 TGGAGCTGAA GGTTGCAGCA TTGGGTTCTG ATCTTCACAT TGAAGTGAAG GGTTATGAGG 541 ATGGAGGGAT CCATCTGGAG TGCAGGTCCA CTGGCTGGTA CCCCCAACCC CAAATAAAGT 601 GGAGCGACAC CAAGGGAGAG AACATCCCGG CTGTGGAAGC ACCTGTGGTT GCAGATGGAG 661 TGGGCCTGTA TGCAGTAGCA GCATCTGTGA TCATGAGAGG CAGCTCTGGT GGGGGTGTAT 721 CCTGCATCAT CAGAAATTCC CTCCTCGGCC TGGAAAAGAC AGCCAGCATA TCCATCGCAG 781 ACCCCTTCTT CAGGAGCGCC CAGCCCTGGA TCGCGGCCCT GGCAGGGACC CTGCCTATCT 841 CGTTGCTGCT TCTCGCAGGA GCCAGTTACT TCTTGTGGAG ACAACAGAAG GAAAAAATTG 901 CTCTGTCCAG GGAGACAGAA AGAGAGCGAG AGATGAAAGA AATGGGATAC GCTGCAACAG 961 AGCAAGAAAT AAGCCTAAGA GAGAAGCTCC AGGAGGAACT CAAGTGGAGG AAAATCCAGT 1021 ACATGGCTCG TGGAGAGAAG TCTTTGGCCT ATCATGAATG GAAAATGGCC CTCTTCAAAC 1081 CTGCGGATGT GATTCTGGAT CCAGACACGG CAAACGCCAT CCTCCTTGTT TCTGAGGACC 1141 AGAGGAGTGT GCAGCGTGCT GAAGAGCCGC GGGATCTGCC AGACAACCCT GAGAGATTTG 1201 AATGGCGTTA CTGTGTCCTT GGCTGTGAAA ACTTCACATC AGGGAGACAT TACTGGGAGG 1261 TGGAAGTGGG GGACAGAAAA GAGTGGCATA TTGGGGTATG TAGTAAGAAC GTGGAGAGGA 1321 AAAAAGGTTG GGTCAAAATG ACACCGGAGA ACGGATACTG GACTATGGGC CTGACTGATG 1381 GGAATAAGTA TCGGGCTCTC ACTGAGCCCA GAACCAACCT GAAACTTCCT GAGCCTCCTA 1441 GGAAAGTGGG GATCTTCCTG GACTATGAGA CTGGAGAGAT CTCGTTCTAT AATGCCACAG 1501 ATGGATCTCA TATCTACACC TTTCCGCACG CCTCTTTCTC TGAGCCTCTA TATCCTGTTT 1561 TCAGAATTTT GACCTTGGAG CCCACTGCCC TGACCATTTG CCCAATACCA AAAGAAGTAG 1621 AGAGTTCCCC CGATCCTGAC CTAGTGCCTG ATCATTCCCT GGAGACACCA CTGACCCCGG 1681 GCTTAGCTAA TGAAAGTGGG GAGCCTCAGG CTGAAGTAAC ATCTCTGCTT CTCCCTGCCC 1741 ACCCTGGAGC TGAGGTCTCC CCTTCTGCAA CAACCAATCA GAACCATAAG CTACAGGCAC 1801 GCACTGAAGC ACTTTACTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1861 gcttatcaat ttgttgcaac gaac