Construct: ORF ccsbBroadEn_02417

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002032.1_s300c1, BRDN0000395986
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BTN3A3 (10384)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10384 BTN3A3 butyrophilin subfamily 3 me... NM_006994.5 100% 100%
2 human 10384 BTN3A3 butyrophilin subfamily 3 me... NM_197974.3 91.6% 91.6% 0_1ins126;790_791ins21
3 human 11119 BTN3A1 butyrophilin subfamily 3 me... NM_007048.6 79.3% 74.8% (many diffs)
4 human 11119 BTN3A1 butyrophilin subfamily 3 me... XM_005248833.2 78.5% 73.9% (many diffs)
5 human 11119 BTN3A1 butyrophilin subfamily 3 me... NM_001145008.2 70.9% 67.1% (many diffs)
6 human 11119 BTN3A1 butyrophilin subfamily 3 me... XM_006714983.3 64.1% 60.4% (many diffs)
7 human 10384 BTN3A3 butyrophilin subfamily 3 me... NM_001242803.2 64% 63.8% 0_1ins126;307_308ins504
8 human 11119 BTN3A1 butyrophilin subfamily 3 me... NM_001145009.2 57.7% 49.8% (many diffs)
9 human 11118 BTN3A2 butyrophilin subfamily 3 me... NM_001197246.2 54.3% 52% (many diffs)
10 human 11118 BTN3A2 butyrophilin subfamily 3 me... NM_001197247.3 54.3% 52% (many diffs)
11 human 11118 BTN3A2 butyrophilin subfamily 3 me... NM_007047.5 54.3% 52% (many diffs)
12 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_005248827.4 54.3% 52% (many diffs)
13 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_017010211.1 54.3% 52% (many diffs)
14 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_017010212.1 54.3% 52% (many diffs)
15 human 11119 BTN3A1 butyrophilin subfamily 3 me... NM_194441.3 54.2% 49.1% (many diffs)
16 human 11119 BTN3A1 butyrophilin subfamily 3 me... XM_005248834.4 54.2% 49.1% (many diffs)
17 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_006714979.4 53.9% 51.6% (many diffs)
18 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_006714980.4 53.9% 51.6% (many diffs)
19 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_006714981.4 53.9% 51.6% (many diffs)
20 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_011514267.3 53.9% 51.6% (many diffs)
21 human 11118 BTN3A2 butyrophilin subfamily 3 me... NM_001197248.2 49.2% 47.4% (many diffs)
22 human 11118 BTN3A2 butyrophilin subfamily 3 me... NM_001197249.2 47.2% 45% (many diffs)
23 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_017010214.2 47.2% 45% (many diffs)
24 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_006714982.4 46.8% 44.6% (many diffs)
25 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_011514269.3 46.8% 44.6% (many diffs)
26 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_017010213.2 46.8% 44.6% (many diffs)
27 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_005248831.4 43.7% 41.9% (many diffs)
28 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_005248832.4 43.7% 41.9% (many diffs)
29 human 11119 BTN3A1 butyrophilin subfamily 3 me... XR_926039.3 42.6% (many diffs)
30 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_011514270.3 39.1% 37.3% (many diffs)
31 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_011514271.2 39.1% 37.3% (many diffs)
32 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_017010215.2 39.1% 37.3% (many diffs)
33 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_017010216.2 36.6% 34.9% (many diffs)
34 human 11118 BTN3A2 butyrophilin subfamily 3 me... XM_017010217.2 32% 30.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1818
ORF length:
1752
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA AATGGCAAGT TCCCTGGCTT TCCTTCTGCT CAACTTTCAT GTCTCCCTCT
121TCTTGGTCCA GCTGCTCACT CCTTGCTCAG CTCAGTTTTC TGTGCTTGGA CCCTCTGGGC
181CCATCCTGGC CATGGTGGGT GAAGACGCTG ATCTGCCCTG TCACCTGTTC CCGACCATGA
241GTGCAGAGAC CATGGAGCTG AGGTGGGTGA GTTCCAGCCT AAGGCAGGTG GTGAACGTGT
301ATGCAGATGG AAAGGAAGTG GAAGACAGGC AGAGTGCACC GTATCGAGGG AGAACTTCGA
361TTCTGCGGGA TGGCATCACT GCAGGGAAGG CTGCTCTCCG AATACACAAC GTCACAGCCT
421CTGACAGTGG AAAGTACTTG TGTTATTTCC AAGATGGTGA CTTCTACGAA AAAGCCCTGG
481TGGAGCTGAA GGTTGCAGCA TTGGGTTCTG ATCTTCACAT TGAAGTGAAG GGTTATGAGG
541ATGGAGGGAT CCATCTGGAG TGCAGGTCCA CTGGCTGGTA CCCCCAACCC CAAATAAAGT
601GGAGCGACAC CAAGGGAGAG AACATCCCGG CTGTGGAAGC ACCTGTGGTT GCAGATGGAG
661TGGGCCTGTA TGCAGTAGCA GCATCTGTGA TCATGAGAGG CAGCTCTGGT GGGGGTGTAT
721CCTGCATCAT CAGAAATTCC CTCCTCGGCC TGGAAAAGAC AGCCAGCATA TCCATCGCAG
781ACCCCTTCTT CAGGAGCGCC CAGCCCTGGA TCGCGGCCCT GGCAGGGACC CTGCCTATCT
841CGTTGCTGCT TCTCGCAGGA GCCAGTTACT TCTTGTGGAG ACAACAGAAG GAAAAAATTG
901CTCTGTCCAG GGAGACAGAA AGAGAGCGAG AGATGAAAGA AATGGGATAC GCTGCAACAG
961AGCAAGAAAT AAGCCTAAGA GAGAAGCTCC AGGAGGAACT CAAGTGGAGG AAAATCCAGT
1021ACATGGCTCG TGGAGAGAAG TCTTTGGCCT ATCATGAATG GAAAATGGCC CTCTTCAAAC
1081CTGCGGATGT GATTCTGGAT CCAGACACGG CAAACGCCAT CCTCCTTGTT TCTGAGGACC
1141AGAGGAGTGT GCAGCGTGCT GAAGAGCCGC GGGATCTGCC AGACAACCCT GAGAGATTTG
1201AATGGCGTTA CTGTGTCCTT GGCTGTGAAA ACTTCACATC AGGGAGACAT TACTGGGAGG
1261TGGAAGTGGG GGACAGAAAA GAGTGGCATA TTGGGGTATG TAGTAAGAAC GTGGAGAGGA
1321AAAAAGGTTG GGTCAAAATG ACACCGGAGA ACGGATACTG GACTATGGGC CTGACTGATG
1381GGAATAAGTA TCGGGCTCTC ACTGAGCCCA GAACCAACCT GAAACTTCCT GAGCCTCCTA
1441GGAAAGTGGG GATCTTCCTG GACTATGAGA CTGGAGAGAT CTCGTTCTAT AATGCCACAG
1501ATGGATCTCA TATCTACACC TTTCCGCACG CCTCTTTCTC TGAGCCTCTA TATCCTGTTT
1561TCAGAATTTT GACCTTGGAG CCCACTGCCC TGACCATTTG CCCAATACCA AAAGAAGTAG
1621AGAGTTCCCC CGATCCTGAC CTAGTGCCTG ATCATTCCCT GGAGACACCA CTGACCCCGG
1681GCTTAGCTAA TGAAAGTGGG GAGCCTCAGG CTGAAGTAAC ATCTCTGCTT CTCCCTGCCC
1741ACCCTGGAGC TGAGGTCTCC CCTTCTGCAA CAACCAATCA GAACCATAAG CTACAGGCAC
1801GCACTGAAGC ACTTTACTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1861gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

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