Construct: ORF ccsbBroadEn_02555

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012849.1_s300c1, BRDN0000391908
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TXNL4A (10907)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10907 TXNL4A thioredoxin like 4A NM_006701.5 100% 100%
2 human 10907 TXNL4A thioredoxin like 4A NM_001305557.2 94.3% 94.3% 127_128ins24
3 human 10907 TXNL4A thioredoxin like 4A NM_001303471.3 69.5% 62.8% (many diffs)
4 human 10907 TXNL4A thioredoxin like 4A NM_001305563.2 50% 50% 0_1ins213
5 human 10907 TXNL4A thioredoxin like 4A NM_001305564.2 50% 50% 0_1ins213
6 human 10907 TXNL4A thioredoxin like 4A NR_131176.2 12% 1_171del;428_497del;668_3542del
7 human 10907 TXNL4A thioredoxin like 4A NR_131175.2 11.5% (many diffs)
8 human 10907 TXNL4A thioredoxin like 4A NR_131177.2 9.2% 1_171del;322_323ins104;494_3368del
9 mouse 27366 Txnl4a thioredoxin-like 4A NM_025299.3 89.9% 100% (many diffs)
10 mouse 27366 Txnl4a thioredoxin-like 4A XM_006526487.3 89.9% 100% (many diffs)
11 mouse 27366 Txnl4a thioredoxin-like 4A XR_386372.1 46.4% (many diffs)
12 mouse 27366 Txnl4a thioredoxin-like 4A XM_017317914.1 43.1% 50% (many diffs)
13 mouse 27366 Txnl4a thioredoxin-like 4A NM_001038608.2 38.7% 36.3% (many diffs)
14 mouse 27366 Txnl4a thioredoxin-like 4A NM_001042408.1 38.7% 36.3% (many diffs)
15 mouse 27366 Txnl4a thioredoxin-like 4A NM_178604.3 38.7% 36.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
492
ORF length:
426
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC GTACATGCTC CCGCACCTGC ACAACGGCTG GCAGGTGGAC CAGGCCATCC
121TCTCGGAGGA GGACCGCGTG GTCGTCATCC GCTTCGGCCA CGACTGGGAT CCTACGTGCA
181TGAAGATGGA CGAGGTCCTG TACAGCATCG CCGAGAAGGT TAAAAATTTT GCAGTTATTT
241ATCTTGTGGA TATTACAGAA GTGCCTGACT TCAACAAAAT GTATGAGTTA TACGATCCAT
301GTACTGTCAT GTTTTTCTTC AGGAACAAGC ACATCATGAT TGACTTGGGG ACTGGCAACA
361ACAACAAGAT TAACTGGGCC ATGGAGGACA AGCAGGAGAT GGTGGACATC ATCGAGACGG
421TGTACCGCGG GGCCCGCAAA GGCCGCGGCC TGGTGGTGTC CCCCAAGGAC TACTCCACCA
481AGTACCGCTA CTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
541caatttgttg caacgaac

Download FASTA (ORF) (Full)