Construct: ORF ccsbBroadEn_02632
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013737.1_s300c1, BRDN0000388783
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PTP4A3 (11156)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | NM_007079.3 | 100% | 100% | |
| 2 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | XM_017012998.2 | 100% | 100% | |
| 3 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | NM_032611.3 | 85.5% | 85.5% | 330_404del |
| 4 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | XM_005250764.2 | 85.5% | 85.5% | 330_404del |
| 5 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | XM_011516803.1 | 85.5% | 85.5% | 330_404del |
| 6 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | XM_011516805.1 | 85.5% | 85.5% | 330_404del |
| 7 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | XM_024447057.1 | 85.5% | 85.5% | 330_404del |
| 8 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | XM_017012999.2 | 83.7% | 83.7% | 30_31ins72 |
| 9 | human | 11156 | PTP4A3 | protein tyrosine phosphatas... | XM_006716500.3 | 71.6% | 71.6% | 30_31ins72;258_332del |
| 10 | mouse | 19245 | Ptp4a3 | protein tyrosine phosphatas... | NM_001166388.1 | 76.1% | 82% | (many diffs) |
| 11 | mouse | 19245 | Ptp4a3 | protein tyrosine phosphatas... | NM_001166389.1 | 76.1% | 82% | (many diffs) |
| 12 | mouse | 19245 | Ptp4a3 | protein tyrosine phosphatas... | NM_008975.3 | 76.1% | 82% | (many diffs) |
| 13 | mouse | 19245 | Ptp4a3 | protein tyrosine phosphatas... | XM_006520640.3 | 76.1% | 82% | (many diffs) |
| 14 | mouse | 19245 | Ptp4a3 | protein tyrosine phosphatas... | XM_006520642.1 | 76.1% | 82% | (many diffs) |
| 15 | mouse | 19245 | Ptp4a3 | protein tyrosine phosphatas... | XM_011245523.1 | 76.1% | 82% | (many diffs) |
| 16 | mouse | 19245 | Ptp4a3 | protein tyrosine phosphatas... | NM_001166390.1 | 64.5% | 64.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 510
- ORF length:
- 444
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TCGGATGAAC CGCCCGGCCC CGGTGGAGGT GAGCTACAAA CACATGCGCT 121 TCCTCATCAC CCACAACCCC ACCAACGCCA CGCTCAGCAC CTTCATTGAG GACCTGAAGA 181 AGTACGGGGC TACCACTGTG GTGCGTGTGT GTGAAGTGAC CTATGACAAA ACGCCGCTGG 241 AGAAGGATGG CATCACCGTT GTGGACTGGC CGTTTGACGA TGGGGCGCCC CCGCCCGGCA 301 AGGTAGTGGA AGACTGGCTG AGCCTGGTGA AGGCCAAGTT CTGTGAGGCC CCCGGCAGCT 361 GCGTGGCTGT GCACTGCGTG GCGGGCCTGG GCCGGAAGCG CCGCGGAGCC ATCAACAGCA 421 AGCAGCTCAC CTACCTGGAG AAATACCGGC CCAAACAGAG GCTGCGGTTC AAAGACCCAC 481 ACACGCACAA GACCCGGTGC TGCGTTATGT ACCCAACTTT CTTGTACAAA GTtggcatta 541 taagaaagca ttgcttatca atttgttgca acgaac