Transcript: Mouse NM_001166388.1

Mus musculus protein tyrosine phosphatase 4a3 (Ptp4a3), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Ptp4a3 (19245)
Length:
3808
CDS:
1435..1956

Additional Resources:

NCBI RefSeq record:
NM_001166388.1
NBCI Gene record:
Ptp4a3 (19245)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001166388.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000029873 AGTTCTACAATGACCCGGGAA pLKO.1 1706 CDS 100% 2.160 3.024 N Ptp4a3 n/a
2 TRCN0000029870 CATCCAGTTCATCCGACAGAA pLKO.1 1821 CDS 100% 4.950 3.465 N Ptp4a3 n/a
3 TRCN0000320048 CATCCAGTTCATCCGACAGAA pLKO_005 1821 CDS 100% 4.950 3.465 N Ptp4a3 n/a
4 TRCN0000029872 CGCGTGTGTGAAGTGACCTAT pLKO.1 1573 CDS 100% 4.950 3.465 N Ptp4a3 n/a
5 TRCN0000320047 CGCGTGTGTGAAGTGACCTAT pLKO_005 1573 CDS 100% 4.950 3.465 N Ptp4a3 n/a
6 TRCN0000355597 GTGTGTGAAGTGACCTATGAC pLKO_005 1576 CDS 100% 4.950 3.465 N PTP4A3 n/a
7 TRCN0000029871 GCGCTTCCTCATCACCCACAA pLKO.1 1485 CDS 100% 1.350 0.810 N Ptp4a3 n/a
8 TRCN0000319972 GCGCTTCCTCATCACCCACAA pLKO_005 1485 CDS 100% 1.350 0.810 N Ptp4a3 n/a
9 TRCN0000029869 CGGCCCAAAGATTTATTTATT pLKO.1 3590 3UTR 100% 15.000 7.500 Y Ptp4a3 n/a
10 TRCN0000319973 CGGCCCAAAGATTTATTTATT pLKO_005 3590 3UTR 100% 15.000 7.500 Y Ptp4a3 n/a
11 TRCN0000368291 AGCTCACCTACCTGGAGAAAT pLKO_005 1868 CDS 100% 13.200 9.240 N PTP4A3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001166388.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02632 pDONR223 100% 76.1% 82% None (many diffs) n/a
2 ccsbBroad304_02632 pLX_304 0% 76.1% 82% V5 (many diffs) n/a
3 TRCN0000474068 CCAAGAGTACGCCGTGGATCCAGG pLX_317 100% 76.1% 82% V5 (many diffs) n/a
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