Construct: ORF ccsbBroadEn_02710
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014950.1_s300c1, BRDN0000396660
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SCMH1 (22955)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22955 | SCMH1 | Scm polycomb group protein ... | NM_001172221.1 | 100% | 100% | |
| 2 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_006710464.1 | 100% | 100% | |
| 3 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_011541036.2 | 100% | 100% | |
| 4 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_017000699.1 | 100% | 100% | |
| 5 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_011541035.2 | 97.7% | 97.7% | 1_42del |
| 6 | human | 22955 | SCMH1 | Scm polycomb group protein ... | NM_001172218.2 | 96.3% | 96.3% | 1464_1465ins66 |
| 7 | human | 22955 | SCMH1 | Scm polycomb group protein ... | NM_001172220.2 | 96.3% | 96.3% | 1464_1465ins66 |
| 8 | human | 22955 | SCMH1 | Scm polycomb group protein ... | NM_001350667.2 | 94.5% | 89.7% | 0_1ins94;106_109delGTGA |
| 9 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_024454203.1 | 94.5% | 89.7% | 0_1ins94;106_109delGTGA |
| 10 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_024454204.1 | 94.5% | 89.7% | 0_1ins94;106_109delGTGA |
| 11 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_024454206.1 | 94.5% | 89.7% | 0_1ins94;106_109delGTGA |
| 12 | human | 22955 | SCMH1 | Scm polycomb group protein ... | NM_012236.4 | 94.1% | 94.1% | 1_42del;1506_1507ins66 |
| 13 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_017000702.1 | 90.8% | 86% | 0_1ins94;106_109delGTGA;1374_1375ins66 |
| 14 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_017000703.1 | 90.8% | 86% | 0_1ins94;106_109delGTGA;1374_1375ins66 |
| 15 | human | 22955 | SCMH1 | Scm polycomb group protein ... | NM_001031694.2 | 90.7% | 90.7% | 1_183del |
| 16 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_011541033.2 | 90.7% | 90.7% | 1_183del |
| 17 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_017000698.1 | 90.1% | 90.1% | 1_123del;1587_1588ins66 |
| 18 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_006710462.2 | 89.4% | 89.4% | 1_213del |
| 19 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_011541032.2 | 89.4% | 89.4% | 1_213del |
| 20 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_017000700.1 | 87.7% | 81.6% | 1_42del;1571_1589del;1692_1693ins166 |
| 21 | human | 22955 | SCMH1 | Scm polycomb group protein ... | NM_001172219.2 | 86.1% | 86.1% | 1_213del;1677_1678ins66 |
| 22 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_011541043.2 | 82.1% | 82.1% | 0_1ins321 |
| 23 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_011541044.1 | 82.1% | 82.1% | 0_1ins321 |
| 24 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_011541034.1 | 80.3% | 74.8% | 1_213del;1742_1760del;1863_1864ins166 |
| 25 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_017000708.1 | 79.9% | 79.9% | 530_531ins360 |
| 26 | human | 22955 | SCMH1 | Scm polycomb group protein ... | NM_001350668.1 | 78.4% | 78.4% | 0_1ins321;1143_1144ins66 |
| 27 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_017000711.1 | 76.2% | 76.2% | 530_531ins360;1104_1105ins66 |
| 28 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_017000712.1 | 76.2% | 76.2% | 530_531ins360;1104_1105ins66 |
| 29 | human | 22955 | SCMH1 | Scm polycomb group protein ... | NM_001172222.2 | 76% | 76% | 1_42del;240_241ins333;1173_1174ins66 |
| 30 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_017000713.2 | 74.5% | 69.8% | 0_1ins94;106_109delGTGA;440_441ins360 |
| 31 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XR_001737051.1 | 72.1% | (many diffs) | |
| 32 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_011541039.1 | 71.4% | 71.4% | 1_213del;743_744ins360 |
| 33 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XR_946584.2 | 69.4% | 1_415del;1880_1950del;2071_2072ins212 | |
| 34 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XM_011541040.2 | 66.5% | 64.6% | (many diffs) |
| 35 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XR_002959760.1 | 62.6% | (many diffs) | |
| 36 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XR_002959763.1 | 62.3% | 1_415del;1699_2112del;2467_2468ins159 | |
| 37 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XR_002959762.1 | 62.2% | 1_415del;1699_2118del;2473_2474ins159 | |
| 38 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XR_002959761.1 | 59.9% | (many diffs) | |
| 39 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XR_001737054.1 | 56.5% | 1_364del;1635_1636insCAGGTACCTAC;2151_3145del | |
| 40 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XR_001737045.1 | 55.1% | 1_415del;1880_1933del;2267_3261del | |
| 41 | human | 22955 | SCMH1 | Scm polycomb group protein ... | NR_135092.1 | 52.6% | 1_552del;2017_2070del;2404_3412del | |
| 42 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XR_002959757.1 | 51.9% | 1_415del;1700_1954del;2468_3462del | |
| 43 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XR_001737053.1 | 51.2% | (many diffs) | |
| 44 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XR_001737052.1 | 50.7% | (many diffs) | |
| 45 | human | 22955 | SCMH1 | Scm polycomb group protein ... | XR_001737046.1 | 50% | (many diffs) | |
| 46 | mouse | 29871 | Scmh1 | sex comb on midleg homolog 1 | XM_006503150.3 | 89.9% | 92.5% | (many diffs) |
| 47 | mouse | 29871 | Scmh1 | sex comb on midleg homolog 1 | XM_011240552.1 | 84.7% | 87.2% | (many diffs) |
| 48 | mouse | 29871 | Scmh1 | sex comb on midleg homolog 1 | NM_013883.2 | 81.6% | 84% | (many diffs) |
| 49 | mouse | 29871 | Scmh1 | sex comb on midleg homolog 1 | XM_011240551.1 | 81.6% | 84% | (many diffs) |
| 50 | mouse | 29871 | Scmh1 | sex comb on midleg homolog 1 | XM_017320252.1 | 81.6% | 84% | (many diffs) |
| 51 | mouse | 29871 | Scmh1 | sex comb on midleg homolog 1 | XM_017320253.1 | 81.6% | 84% | (many diffs) |
| 52 | mouse | 29871 | Scmh1 | sex comb on midleg homolog 1 | XM_011240550.1 | 80.6% | 83% | (many diffs) |
| 53 | mouse | 29871 | Scmh1 | sex comb on midleg homolog 1 | NM_001159630.1 | 76.7% | 78.6% | (many diffs) |
| 54 | mouse | 29871 | Scmh1 | sex comb on midleg homolog 1 | XM_017320254.1 | 76.5% | 78.7% | (many diffs) |
| 55 | mouse | 29871 | Scmh1 | sex comb on midleg homolog 1 | XM_006503149.2 | 75.6% | 77.8% | (many diffs) |
| 56 | mouse | 29871 | Scmh1 | sex comb on midleg homolog 1 | XR_001784154.1 | 51% | (many diffs) | |
| 57 | mouse | 29871 | Scmh1 | sex comb on midleg homolog 1 | XR_001784153.1 | 49.9% | (many diffs) | |
| 58 | mouse | 29871 | Scmh1 | sex comb on midleg homolog 1 | XR_001784155.1 | 19% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1863
- ORF length:
- 1797
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA ATTGGAAGCA CAGGACCCCA GGAACACCAC ATCCACCTGT ATTGCCACAG 121 TAGTTGGACT GACAGGTGCC CGCCTTCGCC TGCGCCTTGA TGGGAGCGAC AACAAAAATG 181 ACTTCTGGCG GCTGGTTGAC TCAGCTGAAA TCCAGCCTAT TGGGAACTGT GAAAAGAATG 241 GGGGTATGCT ACAGCCACCT CTTGGATTTC GGCTGAATGC GTCTTCTTGG CCCATGTTCC 301 TTTTGAAGAC GCTAAATGGA GCAGAGATGG CTCCCATCAG GATTTTCCAC AAGGAGCCAC 361 CATCGCCTTC CCACAACTTC TTCAAAATGG GAATGAAGCT AGAAGCTGTG GACAGGAAGA 421 ACCCTCATTT CATTTGCCCA GCCACTATTG GGGAGGTTCG GGGCTCAGAG GTGCTTGTCA 481 CTTTTGATGG GTGGCGAGGG GCCTTTGACT ACTGGTGCCG CTTCGACTCC CGAGACATCT 541 TCCCTGTGGG CTGGTGTTCC TTGACTGGAG ACAACCTGCA GCCTCCTGGC ACCAAAGTTG 601 TGATTCCAAA GAATCCCTAT CCTGCCTCCG ATGTGAATAC TGAGAAGCCC AGCATCCACA 661 GCAGCACCAA AACTGTCTTG GAACATCAAC CAGGGCAGAG GGGGCGTAAA CCAGGAAAGA 721 AGCGGGGCCG GACACCCAAG ACCCTAATTT CCCATCCCAT CTCTGCCCCA TCCAAGACAG 781 CTGAACCTTT GAAATTCCCA AAGAAGAGAG GTCCCAAACC TGGCAGCAAG AGGAAACCTC 841 GGACTTTGCT GAACCCACCA CCTGCCTCAC CAACAACCAG CACTCCTGAA CCGGATACCA 901 GCACTGTACC CCAGGATGCT GCCACCATCC CCAGCTCAGC CATGCAGGCC CCAACAGTTT 961 GTATCTACTT GAACAAGAAT GGCAGCACAG GCCCCCACTT AGATAAGAAG AAGGTCCAGC 1021 AACTCCCTGA CCATTTTGGA CCAGCCCGTG CCTCTGTGGT GTTGCAGCAG GCTGTCCAGG 1081 CCTGTATCGA CTGTGCTTAT CACCAGAAAA CCGTCTTCAG CTTCCTCAAG CAAGGCCATG 1141 GTGGTGAGGT TATCTCAGCC GTGTTTGACC GGGAACAGCA TACCCTCAAC CTCCCAGCAG 1201 TCAACAGCAT CACCTACGTC CTCCGCTTCC TGGAGAAACT CTGCCACAAC CTTCGTAGTG 1261 ACAATCTGTT TGGCAACCAG CCCTTTACAC AGACTCACTT GTCACTCACT GCCATAGAGT 1321 ACAGCCACAG CCACGACAGG TACCTACCAG GTGAAACCTT TGTCCTGGGG AATAGTCTGG 1381 CCCGCTCCTT GGAACCACAC TCAGACTCAA TGGACTCTGC CTCAAATCCC ACCAACCTTG 1441 TCAGCACCTC CCAAAGGCAC CGGCCCTTGC TTTCATCCTG TGGCCTCCCA CCAAGCACTG 1501 CCTCAGCTGT GCGCAGGCTA TGCTCCAGGG GAGTGTTAAA AGGATCAAAT GAAAGAAGGG 1561 ATATGGAATC ATTTTGGAAA CTAAATCGTT CCCCAGGGTC GGACCGATAC CTGGAGAGCC 1621 GCGATGCCTC TCGACTGAGT GGCCGGGACC CCTCCTCATG GACAGTCGAG GATGTGATGC 1681 AGTTTGTCCG GGAAGCTGAT CCTCAGCTTG GACCCCACGC TGACCTGTTT CGCAAACACG 1741 AGATCGATGG CAAGGCCCTG CTGCTGCTGC GCAGTGACAT GATGATGAAG TACATGGGCC 1801 TGAAGCTGGG GCCTGCACTC AAGCTCTCCT ACCACATTGA CCGGCTGAAG CAGGGCAAGT 1861 TCTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1921 gcaacgaac