Construct: ORF ccsbBroadEn_02826

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011081.1_s300c1, BRDN0000386399
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC7A11 (23657)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23657 SLC7A11 solute carrier family 7 mem... NM_014331.4 99.9% 100% 1443G>A
2 human 23657 SLC7A11 solute carrier family 7 mem... XM_011531802.3 96.9% 95.6% (many diffs)
3 human 23657 SLC7A11 solute carrier family 7 mem... XR_001741190.2 15.4% (many diffs)
4 human 23657 SLC7A11 solute carrier family 7 mem... XR_001741191.2 14.2% (many diffs)
5 mouse 26570 Slc7a11 solute carrier family 7 (ca... NM_011990.2 87.2% 89% (many diffs)
6 mouse 26570 Slc7a11 solute carrier family 7 (ca... XM_006500776.3 83.7% 85.4% (many diffs)
7 mouse 26570 Slc7a11 solute carrier family 7 (ca... XM_006500777.3 79.7% 65.8% (many diffs)
8 mouse 26570 Slc7a11 solute carrier family 7 (ca... XM_006500778.3 77.5% 73.2% (many diffs)
9 mouse 26570 Slc7a11 solute carrier family 7 (ca... XM_017319590.1 56.9% 58.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1569
ORF length:
1503
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT CAGAAAGCCT GTTGTGTCCA CCATCTCCAA AGGAGGTTAC CTGCAGGGAA
121ATGTTAACGG GAGGCTGCCT TCCCTGGGCA ACAAGGAGCC ACCTGGGCAG GAGAAAGTGC
181AGCTGAAGAG GAAAGTCACT TTACTGAGGG GAGTCTCCAT TATCATTGGC ACCATCATTG
241GAGCAGGAAT CTTCATCTCT CCTAAGGGCG TGCTCCAGAA CACGGGCAGC GTGGGCATGT
301CTCTGACCAT CTGGACGGTG TGTGGGGTCC TGTCACTATT TGGAGCTTTG TCTTATGCTG
361AATTGGGAAC AACTATAAAG AAATCTGGAG GTCATTACAC ATATATTTTG GAAGTCTTTG
421GTCCATTACC AGCTTTTGTA CGAGTCTGGG TGGAACTCCT CATAATACGC CCTGCAGCTA
481CTGCTGTGAT ATCCCTGGCA TTTGGACGCT ACATTCTGGA ACCATTTTTT ATTCAATGTG
541AAATCCCTGA ACTTGCGATC AAGCTCATTA CAGCTGTGGG CATAACTGTA GTGATGGTCC
601TAAATAGCAT GAGTGTCAGC TGGAGCGCCC GGATCCAGAT TTTCTTAACC TTTTGCAAGC
661TCACAGCAAT TCTGATAATT ATAGTCCCTG GAGTTATGCA GCTAATTAAA GGTCAAACGC
721AGAACTTTAA AGACGCCTTT TCAGGAAGAG ATTCAAGTAT TACGCGGTTG CCACTGGCTT
781TTTATTATGG AATGTATGCA TATGCTGGCT GGTTTTACCT CAACTTTGTT ACTGAAGAAG
841TAGAAAACCC TGAAAAAACC ATTCCCCTTG CAATATGTAT ATCCATGGCC ATTGTCACCA
901TTGGCTATGT GCTGACAAAT GTGGCCTACT TTACGACCAT TAATGCTGAG GAGCTGCTGC
961TTTCAAATGC AGTGGCAGTG ACCTTTTCTG AGCGGCTACT GGGAAATTTC TCATTAGCAG
1021TTCCGATCTT TGTTGCCCTC TCCTGCTTTG GCTCCATGAA CGGTGGTGTG TTTGCTGTCT
1081CCAGGTTATT CTATGTTGCG TCTCGAGAGG GTCACCTTCC AGAAATCCTC TCCATGATTC
1141ATGTCCGCAA GCACACTCCT CTACCAGCTG TTATTGTTTT GCACCCTTTG ACAATGATAA
1201TGCTCTTCTC TGGAGACCTC GACAGTCTTT TGAATTTCCT CAGTTTTGCC AGGTGGCTTT
1261TTATTGGGCT GGCAGTTGCT GGGCTGATTT ATCTTCGATA CAAATGCCCA GATATGCATC
1321GTCCTTTCAA GGTGCCACTG TTCATCCCAG CTTTGTTTTC CTTCACATGC CTCTTCATGG
1381TTGCCCTTTC CCTCTATTCG GACCCATTTA GTACAGGGAT TGGCTTCGTC ATCACTCTGA
1441CTGGAGTCCC TGCGTATTAT CTCTTTATTA TATGGGACAA GAAACCCAGG TGGTTTAGAA
1501TAATGTCAGA GAAAATAACC AGAACATTAC AAATAATACT GGAAGTTGTA CCAGAAGAAG
1561ATAAGTTATG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
1621tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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