Transcript: Human XR_001741190.2

PREDICTED: Homo sapiens solute carrier family 7 member 11 (SLC7A11), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC7A11 (23657)
Length:
9701
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001741190.2
NBCI Gene record:
SLC7A11 (23657)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001741190.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000043127 GCTGATTTATCTTCGATACAA pLKO.1 1554 3UTR 100% 5.625 7.875 N SLC7A11 n/a
2 TRCN0000043125 CCTGCGTATTATCTCTTTATT pLKO.1 1720 3UTR 100% 15.000 10.500 N SLC7A11 n/a
3 TRCN0000288865 CCTGCGTATTATCTCTTTATT pLKO_005 1720 3UTR 100% 15.000 10.500 N SLC7A11 n/a
4 TRCN0000380471 CCCTCTATTCGGACCCATTTA pLKO_005 1661 3UTR 100% 13.200 9.240 N SLC7A11 n/a
5 TRCN0000043124 GCACCCTTTGACAATGATAAT pLKO.1 1452 3UTR 100% 13.200 9.240 N SLC7A11 n/a
6 TRCN0000288866 GCACCCTTTGACAATGATAAT pLKO_005 1452 3UTR 100% 13.200 9.240 N SLC7A11 n/a
7 TRCN0000296035 TATTCTATGAGTCGCACAATT pLKO_005 2051 3UTR 100% 13.200 9.240 N SLC7A11 n/a
8 TRCN0000382445 CATTAGCAGTTCCGATCTTTG pLKO_005 1283 3UTR 100% 10.800 7.560 N SLC7A11 n/a
9 TRCN0000043126 CCCTGGAGTTATGCAGCTAAT pLKO.1 901 3UTR 100% 10.800 7.560 N SLC7A11 n/a
10 TRCN0000288926 CCCTGGAGTTATGCAGCTAAT pLKO_005 901 3UTR 100% 10.800 7.560 N SLC7A11 n/a
11 TRCN0000380361 TGGAAGTCTTTGGTCCATTAC pLKO_005 624 3UTR 100% 10.800 7.560 N SLC7A11 n/a
12 TRCN0000043123 CCTGTCACTATTTGGAGCTTT pLKO.1 544 3UTR 100% 4.950 3.465 N SLC7A11 n/a
13 TRCN0000288927 CCTGTCACTATTTGGAGCTTT pLKO_005 544 3UTR 100% 4.950 3.465 N SLC7A11 n/a
14 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 6367 3UTR 100% 13.200 6.600 Y LIAS n/a
15 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 3367 3UTR 100% 10.800 5.400 Y SMIM11A n/a
16 TRCN0000179120 CAACATGGTGAAACCCTGTTT pLKO.1 6441 3UTR 100% 4.950 2.475 Y LOC339059 n/a
17 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 6444 3UTR 100% 4.950 2.475 Y ORAI2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001741190.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02826 pDONR223 100% 15.4% None (many diffs) n/a
2 ccsbBroad304_02826 pLX_304 0% 15.4% V5 (many diffs) n/a
3 TRCN0000466827 TCCGGAGTGCATATCCTCCCTTAC pLX_317 30.4% 15.4% V5 (many diffs) n/a
Download CSV