Construct: ORF ccsbBroadEn_02872

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014856.1_s300c1, BRDN0000388384
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARMC8 (25852)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25852 ARMC8 armadillo repeat containing 8 NM_014154.4 100% 100%
2 human 25852 ARMC8 armadillo repeat containing 8 NM_213654.3 100% 100%
3 human 25852 ARMC8 armadillo repeat containing 8 XM_017006100.2 75.5% 73.7% (many diffs)
4 human 25852 ARMC8 armadillo repeat containing 8 NM_015396.6 57.2% 55.9% (many diffs)
5 human 25852 ARMC8 armadillo repeat containing 8 XM_006713565.2 57.2% 55.9% (many diffs)
6 human 25852 ARMC8 armadillo repeat containing 8 NM_001363941.2 56% 54.6% (many diffs)
7 human 25852 ARMC8 armadillo repeat containing 8 NM_001363942.1 53% 51.7% (many diffs)
8 human 25852 ARMC8 armadillo repeat containing 8 XM_006713566.4 53% 51.7% (many diffs)
9 human 25852 ARMC8 armadillo repeat containing 8 XM_011512632.1 53% 51.7% (many diffs)
10 human 25852 ARMC8 armadillo repeat containing 8 XM_024453441.1 52.5% 51.2% (many diffs)
11 human 25852 ARMC8 armadillo repeat containing 8 NM_001267041.2 51.5% 50% (many diffs)
12 human 25852 ARMC8 armadillo repeat containing 8 NM_001282342.2 48.3% 47% (many diffs)
13 human 25852 ARMC8 armadillo repeat containing 8 XM_017006095.2 47.1% 45.8% (many diffs)
14 human 25852 ARMC8 armadillo repeat containing 8 XM_024453442.1 47.1% 45.8% (many diffs)
15 human 25852 ARMC8 armadillo repeat containing 8 NM_001267042.3 46.1% 44.7% (many diffs)
16 human 25852 ARMC8 armadillo repeat containing 8 XM_017006097.1 42.9% 41.5% (many diffs)
17 human 25852 ARMC8 armadillo repeat containing 8 XM_017006098.2 42.9% 41.5% (many diffs)
18 human 25852 ARMC8 armadillo repeat containing 8 XM_017006099.1 42.9% 41.5% (many diffs)
19 human 25852 ARMC8 armadillo repeat containing 8 XR_001740086.1 22.8% (many diffs)
20 human 25852 ARMC8 armadillo repeat containing 8 XR_001740087.2 22.8% (many diffs)
21 human 25852 ARMC8 armadillo repeat containing 8 XR_002959505.1 18.2% (many diffs)
22 human 25852 ARMC8 armadillo repeat containing 8 XR_002959506.1 17.9% (many diffs)
23 mouse 74125 Armc8 armadillo repeat containing 8 NM_001166138.1 90.1% 95.7% (many diffs)
24 mouse 74125 Armc8 armadillo repeat containing 8 XM_006511515.3 58.9% 61.7% (many diffs)
25 mouse 74125 Armc8 armadillo repeat containing 8 XM_006511513.3 56.6% 59.2% (many diffs)
26 mouse 74125 Armc8 armadillo repeat containing 8 XM_006511511.3 55.3% 57% (many diffs)
27 mouse 74125 Armc8 armadillo repeat containing 8 NM_028768.3 52.7% 54.3% (many diffs)
28 mouse 74125 Armc8 armadillo repeat containing 8 XM_006511512.3 49.6% 51.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1221
ORF length:
1155
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AGTAACAGCT AGCAGTCGCC ACTATGTTGA CAGGCTATTT GACCCTGATC
121CCCAGAAAGT TCTACAAGGT GTCATAGACA TGAAAAATGC TGTAATTGGA AACAACAAGC
181AGAAAGCCAA TCTCATTGTT TTAGGAGCTG TTCCAAGATT GTTGTACTTG CTTCAGCAAG
241AAACCTCAAG CACAGAGCTG AAAACTGAAT GTGCAGTGGT GTTGGGAAGT CTTGCTATGG
301GTACTGAAAA CAATGTCAAG TCTCTACTGG ACTGCCATAT TATCCCTGCC TTATTGCAAG
361GACTACTGTC CCCAGACCTG AAGTTTATTG AAGCTTGCCT CCGATGCCTG CGTACCATCT
421TCACCAGTCC TGTCACTCCA GAGGAGCTAC TGTATACAGA TGCCACAGTG ATACCACACC
481TCATGGCACT GCTTAGCAGG TCCCGCTATA CCCAGGAGTA CATCTGTCAG ATCTTCTCAC
541ACTGCTGTAA AGGGCCAGAT CATCAAACAA TTTTATTTAA CCACGGTGCA GTTCAGAATA
601TTGCTCACCT ACTAACCTCA CTGTCCTACA AAGTTCGAAT GCAAGCACTG AAATGTTTCT
661CAGTTTTAGC TTTTGAAAAC CCCCAGGTAT CGATGACCCT GGTAAATGTT TTGGTTGATG
721GAGAATTGTT ACCACAGATT TTTGTGAAGA TGTTACAGAG GGATAAGCCT ATTGAGATGC
781AGCTCACATC AGCAAAATGT TTAACTTACA TGTGTAGAGC TGGAGCAATT CGGACAGATG
841ATAACTGTAT TGTATTAAAG ACATTACCTT GTTTGGTTCG AATGTGCAGT AAGGAGAGAT
901TACTAGAGGA GAGAGTTGAA GGAGCTGAGA CACTTGCCTA TCTGATTGAA CCAGATGTTG
961AGCTACAGAG AATCGCTAGC ATAACTGATC ACCTCATTGC CATGCTTGCT GATTATTTCA
1021AGTATCCCAG CTCAGTGAGT GCCATCACTG ATATTAAAAG GCTTGATCAT GATTTAAAAC
1081ATGCTCACGA ACTCCGCCAG GCTGCATTCA AGCTCTATGC CTCTCTTGGA GCAAATGATG
1141AAGACATCCG GAAGAAGGTG AGTCTGGGAG AGGGGCGTCC CCCAGTCCTG ACAGCCAGCA
1201GGCAGGGAGT GACGTCAACC TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1261attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)