Construct: ORF ccsbBroadEn_02929

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000850.1_s300c1, BRDN0000389595
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FBXW2 (26190)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26190 FBXW2 F-box and WD repeat domain ... NM_012164.4 100% 100%
2 human 26190 FBXW2 F-box and WD repeat domain ... XM_005251910.4 100% 100%
3 human 26190 FBXW2 F-box and WD repeat domain ... XM_006717049.3 93.4% 93.4% 1_96del
4 human 26190 FBXW2 F-box and WD repeat domain ... XM_011518518.1 93.4% 93.4% 1_96del
5 human 26190 FBXW2 F-box and WD repeat domain ... XM_017014615.2 85.6% 85.6% 489_490ins195
6 human 26190 FBXW2 F-box and WD repeat domain ... XM_024447509.1 85.6% 85.6% 489_490ins195
7 human 26190 FBXW2 F-box and WD repeat domain ... XM_006717051.2 80% 80% 1_96del;585_586ins195
8 human 26190 FBXW2 F-box and WD repeat domain ... XM_005251913.2 71.5% 71.5% 0_1ins387
9 human 26190 FBXW2 F-box and WD repeat domain ... XM_017014616.1 71.5% 71.5% 0_1ins387
10 human 26190 FBXW2 F-box and WD repeat domain ... XM_017014617.1 71.5% 71.5% 0_1ins387
11 human 26190 FBXW2 F-box and WD repeat domain ... XR_001746269.1 49.3% 1_478del;1163_1253del;1521_1522ins410
12 mouse 30050 Fbxw2 F-box and WD-40 domain prot... NM_001164768.1 95.7% 98.4% (many diffs)
13 mouse 30050 Fbxw2 F-box and WD-40 domain prot... NM_013890.4 95.7% 98.4% (many diffs)
14 mouse 30050 Fbxw2 F-box and WD-40 domain prot... XM_006498117.4 88.5% 91% (many diffs)
15 mouse 30050 Fbxw2 F-box and WD-40 domain prot... NM_001164769.1 76.1% 78.4% (many diffs)
16 mouse 30050 Fbxw2 F-box and WD-40 domain prot... NM_001164770.1 67.8% 70.2% (many diffs)
17 mouse 30050 Fbxw2 F-box and WD-40 domain prot... XM_006498118.4 67.8% 70.2% (many diffs)
18 mouse 30050 Fbxw2 F-box and WD-40 domain prot... NM_001164772.1 51.4% 50.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1428
ORF length:
1362
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACATAAAAG
61TTGGCATGGA GAGAAAGGAC TTTGAGACAT GGCTTGATAA CATTTCTGTT ACATTTCTTT
121CTCTGACGGA CTTGCAGAAA AATGAAACTC TGGATCACCT GATTAGTCTG AGTGGGGCAG
181TCCAGCTCAG GCATCTCTCC AATAACCTAG AGACTCTCCT CAAGCGGGAC TTCCTCAAAC
241TCCTTCCCCT GGAGCTCAGT TTTTATTTGT TAAAATGGCT CGATCCTCAG ACTTTACTCA
301CATGCTGCCT CGTCTCTAAA CAGTGGAATA AGGTGATAAG TGCCTGTACA GAGGTGTGGC
361AGACTGCATG TAAAAATTTG GGCTGGCAGA TAGATGATTC TGTTCAGGAC GCTTTGCACT
421GGAAGAAGGT TTATTTGAAG GCTATTTTGA GAATGAAGCA ACTGGAGGAC CATGAAGCCT
481TTGAAACCTC GTCATTAATT GGACACAGTG CCAGAGTGTA TGCACTTTAC TACAAAGATG
541GACTTCTCTG TACAGGGTCA GATGACTTGT CTGCAAAGCT GTGGGATGTG AGCACAGGGC
601AGTGCGTTTA TGGCATCCAG ACCCACACTT GTGCAGCGGT GAAGTTTGAT GAACAGAAGC
661TTGTGACAGG CTCCTTTGAC AACACTGTGG CTTGCTGGGA ATGGAGTTCC GGAGCCAGGA
721CCCAGCACTT TCGGGGGCAC ACGGGGGCGG TATTTAGCGT GGACTACAAT GATGAACTGG
781ATATCTTGGT GAGCGGCTCT GCAGACTTCA CTGTGAAAGT ATGGGCTTTA TCTGCTGGGA
841CATGCCTGAA CACACTCACC GGGCACACGG AATGGGTCAC CAAGGTAGTT TTGCAGAAGT
901GCAAAGTCAA GTCTCTCTTG CACAGTCCTG GAGACTACAT CCTCTTAAGT GCAGACAAAT
961ATGAGATTAA GATTTGGCCA ATTGGGAGAG AAATCAACTG TAAGTGCTTA AAGACATTGT
1021CTGTCTCTGA GGATAGAAGT ATCTGCCTGC AGCCAAGACT TCATTTTGAT GGCAAATACA
1081TTGTCTGTAG TTCAGCACTT GGTCTCTACC AGTGGGACTT TGCCAGTTAT GATATTCTCA
1141GGGTCATCAA GACTCCTGAG ATAGCAAACT TGGCCTTGCT TGGCTTTGGA GATATCTTTG
1201CCCTGCTGTT TGACAACCGC TACCTGTACA TCATGGACTT GCGGACAGAG AGCCTGATTA
1261GTCGCTGGCC TCTGCCAGAG TACAGGAAAT CAAAGAGAGG CTCAAGCTTC CTGGCAGGCG
1321AAGCATCCTG GCTGAATGGA CTGGATGGGC ACAATGACAC GGGCTTGGTC TTTGCCACCA
1381GCATGCCTGA CCACAGTATT CACCTGGTGT TGTGGAAGGA GCACGGCTGC CCAACTTTCT
1441TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

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