Construct: ORF ccsbBroadEn_03049
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007650.1_s300c1, BRDN0000389680
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AAMDC (28971)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 28971 | AAMDC | adipogenesis associated Mth... | NM_001316960.1 | 100% | 100% | |
| 2 | human | 28971 | AAMDC | adipogenesis associated Mth... | NM_001316961.1 | 100% | 100% | |
| 3 | human | 28971 | AAMDC | adipogenesis associated Mth... | NM_001316962.1 | 100% | 100% | |
| 4 | human | 28971 | AAMDC | adipogenesis associated Mth... | NM_024684.3 | 100% | 100% | |
| 5 | human | 28971 | AAMDC | adipogenesis associated Mth... | XM_011544969.2 | 100% | 100% | |
| 6 | human | 28971 | AAMDC | adipogenesis associated Mth... | NM_001363564.1 | 86.5% | 86.5% | 1_57del |
| 7 | human | 28971 | AAMDC | adipogenesis associated Mth... | NM_001316958.1 | 72.5% | 64.5% | (many diffs) |
| 8 | human | 28971 | AAMDC | adipogenesis associated Mth... | NM_001316957.1 | 68.3% | 56.9% | (many diffs) |
| 9 | human | 28971 | AAMDC | adipogenesis associated Mth... | XM_017017620.1 | 60.8% | 50.5% | (many diffs) |
| 10 | human | 28971 | AAMDC | adipogenesis associated Mth... | NR_133637.1 | 43.7% | (many diffs) | |
| 11 | mouse | 66273 | Aamdc | adipogenesis associated Mth... | NM_183251.3 | 90.7% | 91.8% | (many diffs) |
| 12 | mouse | 66273 | Aamdc | adipogenesis associated Mth... | XM_006508114.3 | 90.7% | 91.8% | (many diffs) |
| 13 | mouse | 66273 | Aamdc | adipogenesis associated Mth... | NM_001177945.1 | 73.7% | 74.6% | (many diffs) |
| 14 | mouse | 66273 | Aamdc | adipogenesis associated Mth... | NM_001177947.1 | 66.6% | 66.3% | (many diffs) |
| 15 | mouse | 66273 | Aamdc | adipogenesis associated Mth... | XM_006508115.2 | 66.6% | 66.3% | (many diffs) |
| 16 | mouse | 66273 | Aamdc | adipogenesis associated Mth... | NM_001177946.1 | 54.2% | 54% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 432
- ORF length:
- 366
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC TTCCCCTGAA ATTGCTTCCT TATCATGGGG GCAAATGAAA GTAAAAGGCT 121 CTAATACAAC CTATAAGGAC TGCAAAGTAT GGCCAGGGGG TAGTCGGACT TGGGATTGGA 181 GAGAAACAGG AACTGAGCAT TCTCCTGGTG TGCAGCCTGC AGATGTGAAG GAAGTTGTTG 241 AGAAGGGTGT ACAGACTCTT GTGATTGGCC GAGGGATGAG TGAGGCCTTG AAGGTGCCTT 301 CATCAACTGT GGAGTACCTC AAGAAACATG GCATTGATGT GCGGGTCCTC CAGACAGAGC 361 AGGCAGTGAA GGAGTATAAT GCCTTGGTTG CCCAAGGGGT CAGGGTGGGA GGTGTCTTCC 421 ATTCCACCTG CTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 481 caatttgttg caacgaac