Transcript: Mouse XM_006508114.3

PREDICTED: Mus musculus adipogenesis associated Mth938 domain containing (Aamdc), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Aamdc (66273)
Length:
984
CDS:
355..723

Additional Resources:

NCBI RefSeq record:
XM_006508114.3
NBCI Gene record:
Aamdc (66273)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006508114.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000265052 CAGGCCGTGAAGGAGTATAAT pLKO_005 649 CDS 100% 15.000 21.000 N Aamdc n/a
2 TRCN0000265054 GGGTACAGACTCTTGTGATTG pLKO_005 536 CDS 100% 10.800 15.120 N Aamdc n/a
3 TRCN0000191427 CCTTAACCTATAAGGATTGCA pLKO.1 413 CDS 100% 0.300 0.420 N Aamdc n/a
4 TRCN0000283267 AGTGCAGCCAGCAGATGTAAA pLKO_005 498 CDS 100% 13.200 10.560 N Aamdc n/a
5 TRCN0000191201 CCTATAAGGATTGCAAAGTAT pLKO.1 419 CDS 100% 5.625 4.500 N Aamdc n/a
6 TRCN0000265053 TGCACTCCAGGTTGCTTAAAT pLKO_005 861 3UTR 100% 15.000 10.500 N Aamdc n/a
7 TRCN0000283270 AGGCTCTACCTTAACCTATAA pLKO_005 405 CDS 100% 13.200 9.240 N Aamdc n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006508114.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03049 pDONR223 100% 90.7% 91.8% None (many diffs) n/a
2 ccsbBroadEn_11889 pDONR223 100% 62.8% 57.3% None (many diffs) n/a
3 ccsbBroad304_11889 pLX_304 0% 62.8% 57.3% V5 (many diffs) n/a
4 TRCN0000465280 CAGTTCAGCTACACACAGTAATTT pLX_317 100% 62.8% 57.3% V5 (many diffs) n/a
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