Construct: ORF ccsbBroadEn_03334

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001235.1_s300c1, BRDN0000456591
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NT5DC3 (51559)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51559 NT5DC3 5'-nucleotidase domain cont... NM_001031701.3 100% 100%
2 human 51559 NT5DC3 5'-nucleotidase domain cont... XR_001748759.1 72.2% 1_75del;1264_1440del;1622_1623ins274
3 human 51559 NT5DC3 5'-nucleotidase domain cont... XM_011538476.2 71.7% 68.9% (many diffs)
4 human 51559 NT5DC3 5'-nucleotidase domain cont... XR_944581.2 69.4% 1_77del;1094_1095ins82;1272_1273ins367
5 human 51559 NT5DC3 5'-nucleotidase domain cont... XR_944580.2 69.1% 1_75del;1264_1390del;1479_1480ins367
6 human 51559 NT5DC3 5'-nucleotidase domain cont... XR_001748760.2 68.7% (many diffs)
7 human 51559 NT5DC3 5'-nucleotidase domain cont... XR_944582.2 67.2% (many diffs)
8 human 51559 NT5DC3 5'-nucleotidase domain cont... XM_017019454.1 66.1% 60.9% (many diffs)
9 human 51559 NT5DC3 5'-nucleotidase domain cont... XR_001748757.1 46% (many diffs)
10 human 51559 NT5DC3 5'-nucleotidase domain cont... XR_001748756.1 35.1% 1_56del;1701_4674del
11 human 51559 NT5DC3 5'-nucleotidase domain cont... XR_001748758.1 34.4% (many diffs)
12 human 51559 NT5DC3 5'-nucleotidase domain cont... XR_944574.2 33.8% 1_56del;1701_4856del
13 mouse 103466 Nt5dc3 5'-nucleotidase domain cont... NM_175331.3 85.6% 91.2% (many diffs)
14 mouse 103466 Nt5dc3 5'-nucleotidase domain cont... XM_006513017.3 49.9% 48.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1710
ORF length:
1644
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC CATGGCAGCG GCGGCGGTGG TGGCACGCGG GGCCGGGGCG AGGGCAGCGA
121CAGCGGCGGC TTTGCGGGGT GGCTGCGGGA CCGCGGCTCG GGGGCGGCCG TGTGCGGGCC
181CCGCCCGGCC CTTGTGCACT GCACCCGGGA CCGCCCCGGA CATGAAGCGC TACCTGTGGG
241AGCGCTACCG GGAGGCGAAG AGAAGCACAG AAGAATTGGT TCCTTCCATT ATGAGCAACT
301TGTTGAATCC AGATGCCATT TTCTCAAACA ATGAAATGAG CCTGTCAGAC ATTGAAATCT
361ATGGCTTCGA TTATGATTAC ACCTTGGTGT TTTATTCAAA GCACCTCCAC ACGCTGATAT
421TTAATGCTGC ACGGGACCTT CTCATCAATG AACACCGGTA TCCAGCAGAA ATCAGGAAGT
481ATGAGTATGA CCCAAATTTT GCAATTCGTG GACTTCATTA TGATGTACAG CGGGCAGTAT
541TAATGAAGAT CGATGCTTTT CATTATATCC AGCTGGGAAC TGTCTACAGA GGCCTCAGTG
601TTGTCCCTGA TGAAGAAGTC ATTGAAATGT ACGAGGGGTC CCACGTGCCC TTGGAGCAGA
661TGAGTGACTT TTACGGAAAG AGCTCTCATG GAAACACGAT GAAGCAGTTC ATGGACATCT
721TCTCCCTGCC CGAGATGACC CTCCTGTCCT GCGTGAATGA ATACTTCCTC AAGAACAACA
781TCGACTATGA GCCTGTGCAT CTGTACAAAG ATGTCAAGGA TTCAATTCGA GACGTCCACA
841TCAAAGGAAT AATGTACAGA GCAATTGAAG CAGACATTGA AAAGTACATC TGCTATGCTG
901AGCAGACCCG CGCAGTGTTG GCCAAACTGG CTGATCATGG CAAGAAGATG TTTCTCATCA
961CCAATAGCCC CAGTAGCTTT GTGGACAAAG GGATGAGTTA TATCGTTGGG AAAGACTGGA
1021GGGACCTGTT CGATGTGGTC ATTGTTCAGG CTGAGAAGCC AAACTTCTTT AATGATAAGC
1081GGAGGCCTTT CCGAAAGATG AATGAGAAAG GTGTCTTACT CTGGGATAAA ATCCATAAGT
1141TGCAGAAAGG CCAGATATAC AAGCAGGGTA ATTTATATGA ATTTTTGAAG CTTACTGGAT
1201GGAGAGGATC CAGAGTGTTG TATTTTGGTG ACCATATATA CAGTGACCTG GCGGATTTGA
1261CCCTAAAGCA TGGCTGGAGG ACTGGTGCAA TCATCCCAGA GTTGAGATCT GAGCTCAAAA
1321TCATGAACAC GGAGCAATAC ATTCAAACCA TGACCTGGCT GCAGACCTTG ACTGGCTTAT
1381TGGAACAGAT GCAGGTTCAC AGAGATGCTG AGTCACAGCT GGTTTTGCAG GAGTGGAAAA
1441AGGAAAGGAA GGAGATGCGA GAAATGACCA AGAGTTTCTT CAATGCCCAG TTTGGAAGCC
1501TGTTCCGCAC AGACCAGAAC CCAACCTACT TCCTAAGGCG CCTGTCGCGC TTCGCTGACA
1561TCTACATGGC GTCTCTGAGC TGCCTCCTGA ACTATGACGT CAGCCACACT TTCTACCCCC
1621GGAGGACTCC ACTGCAGCAC GAACTGCCCG CCTGGTCAGA AAGGCCCCCC ACCTTCGGAA
1681CCCCTCTCCT GCAGGAGGCC CAGGCCAAGT ACCCAACTTT CTTGTACAAA GTTGGcatta
1741taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)