Construct: ORF ccsbBroadEn_03398
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017708.1_s300c1, BRDN0000398626
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CSNK1G1 (53944)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_001329606.2 | 100% | 100% | |
| 2 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_022048.5 | 100% | 100% | |
| 3 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_001329607.2 | 93.1% | 93.6% | (many diffs) |
| 4 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_001329605.2 | 86% | 86.3% | (many diffs) |
| 5 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242710.1 | 93.6% | 97.6% | (many diffs) |
| 6 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242709.1 | 91.9% | 95.5% | (many diffs) |
| 7 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_017313273.1 | 86.1% | 87.8% | (many diffs) |
| 8 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | NM_173185.2 | 86.1% | 89.7% | (many diffs) |
| 9 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242708.1 | 86.1% | 89.7% | (many diffs) |
| 10 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242711.1 | 84.9% | 84.3% | (many diffs) |
| 11 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_006511008.2 | 84.6% | 88% | (many diffs) |
| 12 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242703.1 | 84.6% | 88% | (many diffs) |
| 13 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242704.1 | 84.6% | 88% | (many diffs) |
| 14 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242705.1 | 84.6% | 88% | (many diffs) |
| 15 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242706.1 | 84.6% | 88% | (many diffs) |
| 16 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242707.1 | 84.6% | 88% | (many diffs) |
| 17 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242712.1 | 83.9% | 87.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1335
- ORF length:
- 1266
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGACCATCCT AGTAGGGAAA AGGATGAAAG ACAACGGACA ACTAAACCCA 121 TGGCACAAAG GAGTGCACAC TGCTCTCGAC CATCTGGCTC CTCATCGTCC TCTGGGGTTC 181 TTATGGTGGG ACCCAACTTC AGGGTTGGCA AGAAGATAGG ATGTGGGAAC TTCGGAGAGC 241 TCAGATTAGG TAAAAATCTC TACACCAATG AATATGTAGC AATCAAACTG GAACCAATAA 301 AATCACGTGC TCCACAGCTT CATTTAGAGT ACAGATTTTA TAAACAGCTT GGCAGTGCAG 361 GTGAAGGTCT CCCACAGGTG TATTACTTTG GACCATGTGG GAAATATAAT GCCATGGTGC 421 TGGAGCTCCT TGGCCCTAGC TTGGAGGACT TGTTTGACCT CTGTGACCGA ACATTTACTT 481 TGAAGACGGT GTTAATGATA GCCATCCAGC TGCTTTCTCG AATGGAATAC GTGCACTCAA 541 AGAACCTCAT TTACCGAGAT GTCAAGCCAG AGAACTTCCT GATTGGTCGA CAAGGCAATA 601 AGAAAGAGCA TGTTATACAC ATTATAGACT TTGGACTGGC CAAGGAATAC ATTGACCCCG 661 AAACCAAAAA ACACATACCT TATAGGGAAC ACAAAAGTTT AACTGGAACT GCAAGATATA 721 TGTCTATCAA CACGCATCTT GGCAAAGAGC AAAGCCGGAG AGATGATTTG GAAGCCCTAG 781 GCCATATGTT CATGTATTTC CTTCGAGGCA GCCTCCCCTG GCAAGGACTC AAGGCTGACA 841 CATTAAAAGA GAGATATCAA AAAATTGGTG ACACCAAAAG GAATACTCCC ATTGAAGCTC 901 TCTGTGAGAA CTTTCCAGAG GAGATGGCAA CCTACCTTCG ATATGTCAGG CGACTGGACT 961 TCTTTGAAAA ACCTGATTAT GAGTATTTAC GGACCCTCTT CACAGACCTC TTTGAAAAGA 1021 AAGGCTACAC CTTTGACTAT GCCTATGATT GGGTTGGGAG ACCTATTCCT ACTCCAGTAG 1081 GGTCAGTTCA CGTAGATTCT GGTGCATCTG CAATAACTCG AGAAAGCCAC ACACATAGGG 1141 ATCGGCCATC ACAACAGCAG CCTCTTCGAA ATCAGGTGGT TAGCTCAACC AATGGAGAGC 1201 TGAATGTTGA TGATCCCACG GGAGCCCACT CCAATGCACC AATCACAGCT CATGCCGAGG 1261 TGGAGGTAGT GGAGGAAGCT AAGTGCTGCT GTTTCTTTAA GAGGAAAAGG AAGAAGACTG 1321 CTCAGCGCCA CAAGTTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1381 tatcaatttg ttgcaacgaa c