Construct: ORF ccsbBroadEn_03401
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017326.1_s300c1, BRDN0000457381
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- YBEY (54059)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54059 | YBEY | ybeY metalloendoribonuclease | NM_001006114.2 | 100% | 100% | |
| 2 | human | 54059 | YBEY | ybeY metalloendoribonuclease | NM_001314026.1 | 100% | 100% | |
| 3 | human | 54059 | YBEY | ybeY metalloendoribonuclease | XM_017028396.1 | 100% | 100% | |
| 4 | human | 54059 | YBEY | ybeY metalloendoribonuclease | NM_001314025.2 | 71.3% | 68.2% | (many diffs) |
| 5 | human | 54059 | YBEY | ybeY metalloendoribonuclease | NM_058181.3 | 71.3% | 68.2% | (many diffs) |
| 6 | human | 54059 | YBEY | ybeY metalloendoribonuclease | NM_001314022.2 | 66.3% | 51.6% | (many diffs) |
| 7 | human | 54059 | YBEY | ybeY metalloendoribonuclease | XM_011529633.2 | 64.7% | 61.9% | (many diffs) |
| 8 | human | 54059 | YBEY | ybeY metalloendoribonuclease | XM_011529631.2 | 57.8% | 55.3% | (many diffs) |
| 9 | human | 54059 | YBEY | ybeY metalloendoribonuclease | XM_011529629.2 | 55.1% | 52.7% | (many diffs) |
| 10 | human | 54059 | YBEY | ybeY metalloendoribonuclease | XM_011529630.2 | 55.1% | 52.7% | (many diffs) |
| 11 | human | 54059 | YBEY | ybeY metalloendoribonuclease | XM_011529635.2 | 55.1% | 52.7% | (many diffs) |
| 12 | human | 54059 | YBEY | ybeY metalloendoribonuclease | NM_001314023.2 | 44.4% | 41.3% | (many diffs) |
| 13 | human | 54059 | YBEY | ybeY metalloendoribonuclease | XM_017028394.1 | 36.1% | 24.4% | (many diffs) |
| 14 | human | 54059 | YBEY | ybeY metalloendoribonuclease | XM_005261156.4 | 34.9% | 27.8% | (many diffs) |
| 15 | human | 54059 | YBEY | ybeY metalloendoribonuclease | XM_011529634.2 | 30.9% | 24.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 432
- ORF length:
- 363
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGTTTGGTG ATTAGAAATC TGCAGCGAGT CATCCCCATC AGGAGAGCGC 121 CACTTCGCAG TAAGATCGAG ATTGTAAGGA GGATTTTAGG AGTGCAGAAA TTTGACCTGG 181 GGATCATCTG TGTTGACAAC AAGAATATTC AGCACATTAA TAGAATCTAC AGAGATAGAA 241 ATGTCCCAAC CGATGTGCTT TCTTTTCCAT TTCATGAGCA TCTGAAAGCA GGTGAATTTC 301 CCCAGCCTGA TTTTCCAGAT GACTACAATT TGGGAGACAT TTTCCTAGGA GTGGAGTATA 361 TCTTCCATCA GTGTAAAGAA AATGAAGATT ACAATGACGT CCTGACTGTA AGCGGGGATG 421 CTGAAATCAT ATTGCCAACT TTCTTGTACA AAGTTGGcat tataagaaag cattgcttat 481 caatttgttg caacgaac