Transcript: Human NM_001314026.1

Homo sapiens ybeY metalloendoribonuclease (YBEY), transcript variant 7, mRNA.

Source:
NCBI, updated 2018-07-01
Taxon:
Homo sapiens (human)
Gene:
YBEY (54059)
Length:
1850
CDS:
453..818

Additional Resources:

NCBI RefSeq record:
NM_001314026.1
NBCI Gene record:
YBEY (54059)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001314026.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000133681 GCAGTAAGATCGAGATTGTAA pLKO.1 511 CDS 100% 5.625 7.875 N YBEY n/a
2 TRCN0000451688 AGAATCTACAGAGATAGAAAT pLKO_005 606 CDS 100% 13.200 9.240 N YBEY n/a
3 TRCN0000133988 CATCTGAAAGCAGGTGAATTT pLKO.1 663 CDS 100% 13.200 9.240 N YBEY n/a
4 TRCN0000135168 CCTAGGAGTGGAGTATATCTT pLKO.1 728 CDS 100% 5.625 3.938 N YBEY n/a
5 TRCN0000135853 CTTCGCAGTAAGATCGAGATT pLKO.1 507 CDS 100% 4.950 3.465 N YBEY n/a
6 TRCN0000134687 GACTACAATTTGGGAGACATT pLKO.1 705 CDS 100% 4.950 3.465 N YBEY n/a
7 TRCN0000136080 GATCTGTTTCTCCTCAGTGTA pLKO.1 1144 3UTR 100% 4.950 3.465 N YBEY n/a
8 TRCN0000137721 GCTAACACAGACCTGCTGAAT pLKO.1 1068 3UTR 100% 4.950 3.465 N YBEY n/a
9 TRCN0000137931 GCTGCCAGAAGTACAGAAGTT pLKO.1 1103 3UTR 100% 4.950 3.465 N YBEY n/a
10 TRCN0000133657 GAGTATATCTTCCATCAGTGT pLKO.1 738 CDS 100% 2.640 1.848 N YBEY n/a
11 TRCN0000135131 CCAGATGACTACAATTTGGGA pLKO.1 699 CDS 100% 0.750 0.525 N YBEY n/a
12 TRCN0000134832 CCATTTCATGAGCATCTGAAA pLKO.1 651 CDS 100% 0.495 0.347 N YBEY n/a
13 TRCN0000134387 GATCATCTGTGTTGACAACAA pLKO.1 566 CDS 100% 4.950 2.970 N YBEY n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001314026.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03401 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03401 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000476740 CGTTTTACCATCTAGCTCGATGCT pLX_317 100% 100% 100% V5 n/a
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