Transcript: Human XM_011529630.2

PREDICTED: Homo sapiens ybeY metalloendoribonuclease (YBEY), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
YBEY (54059)
Length:
894
CDS:
132..782

Additional Resources:

NCBI RefSeq record:
XM_011529630.2
NBCI Gene record:
YBEY (54059)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011529630.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000133681 GCAGTAAGATCGAGATTGTAA pLKO.1 190 CDS 100% 5.625 7.875 N YBEY n/a
2 TRCN0000451688 AGAATCTACAGAGATAGAAAT pLKO_005 285 CDS 100% 13.200 9.240 N YBEY n/a
3 TRCN0000133988 CATCTGAAAGCAGGTGAATTT pLKO.1 342 CDS 100% 13.200 9.240 N YBEY n/a
4 TRCN0000135168 CCTAGGAGTGGAGTATATCTT pLKO.1 407 CDS 100% 5.625 3.938 N YBEY n/a
5 TRCN0000135853 CTTCGCAGTAAGATCGAGATT pLKO.1 186 CDS 100% 4.950 3.465 N YBEY n/a
6 TRCN0000134687 GACTACAATTTGGGAGACATT pLKO.1 384 CDS 100% 4.950 3.465 N YBEY n/a
7 TRCN0000133657 GAGTATATCTTCCATCAGTGT pLKO.1 417 CDS 100% 2.640 1.848 N YBEY n/a
8 TRCN0000135131 CCAGATGACTACAATTTGGGA pLKO.1 378 CDS 100% 0.750 0.525 N YBEY n/a
9 TRCN0000134832 CCATTTCATGAGCATCTGAAA pLKO.1 330 CDS 100% 0.495 0.347 N YBEY n/a
10 TRCN0000134387 GATCATCTGTGTTGACAACAA pLKO.1 245 CDS 100% 4.950 2.970 N YBEY n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011529630.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03401 pDONR223 100% 55.1% 52.7% None (many diffs) n/a
2 ccsbBroad304_03401 pLX_304 0% 55.1% 52.7% V5 (many diffs) n/a
3 TRCN0000476740 CGTTTTACCATCTAGCTCGATGCT pLX_317 100% 55.1% 52.7% V5 (many diffs) n/a
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