Construct: ORF ccsbBroadEn_03473

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018221.1_s300c1, BRDN0000389968
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ST7L (54879)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54879 ST7L suppression of tumorigenici... NM_017744.5 100% 100%
2 human 54879 ST7L suppression of tumorigenici... NM_138727.4 97% 97% 204_205ins51
3 human 54879 ST7L suppression of tumorigenici... NM_138729.3 95.8% 93.1% (many diffs)
4 human 54879 ST7L suppression of tumorigenici... XM_011541627.2 95.2% 94.6% (many diffs)
5 human 54879 ST7L suppression of tumorigenici... NM_138728.3 94.6% 94.6% 1395_1396ins93
6 human 54879 ST7L suppression of tumorigenici... XM_011541628.2 94.4% 94.4% 1631_1632delAAins95
7 human 54879 ST7L suppression of tumorigenici... XM_017001534.1 90.2% 89.5% (many diffs)
8 human 54879 ST7L suppression of tumorigenici... XM_011541629.2 88.9% 88.1% (many diffs)
9 human 54879 ST7L suppression of tumorigenici... XR_246280.4 87.5% 1_14del;1644_1737del;1834_1971del
10 human 54879 ST7L suppression of tumorigenici... XR_946675.2 80.9% (many diffs)
11 human 54879 ST7L suppression of tumorigenici... XM_005270963.4 78.7% 78.7% 0_1ins366
12 human 54879 ST7L suppression of tumorigenici... XM_005270964.3 78.7% 78.7% 0_1ins366
13 human 54879 ST7L suppression of tumorigenici... XM_011541631.3 78.7% 78.7% 0_1ins366
14 human 54879 ST7L suppression of tumorigenici... XM_017001535.1 77.1% 70.1% (many diffs)
15 human 54879 ST7L suppression of tumorigenici... XM_017001536.1 73.3% 73.3% 0_1ins366;1029_1030ins93
16 human 54879 ST7L suppression of tumorigenici... NM_001308264.2 68.1% 68.1% 0_1ins549
17 human 54879 ST7L suppression of tumorigenici... XM_024447771.1 50.5% 50.4% 1_1delAins853
18 human 54879 ST7L suppression of tumorigenici... XR_001737250.1 49.5% (many diffs)
19 human 54879 ST7L suppression of tumorigenici... XR_001737252.1 45.9% 1_14del;968_969ins115;1625_3387del
20 human 54879 ST7L suppression of tumorigenici... XR_001737249.1 24.4% 1_14del;1258_1259ins151;1589_6292del
21 human 54879 ST7L suppression of tumorigenici... XR_946674.2 22.9% 1_14del;1258_1259ins244;1496_6199del
22 human 54879 ST7L suppression of tumorigenici... XR_001737251.1 21.7% (many diffs)
23 mouse 229681 St7l suppression of tumorigenici... NM_153091.3 85.4% 85.7% (many diffs)
24 mouse 229681 St7l suppression of tumorigenici... NM_001253702.1 80.4% 80.2% (many diffs)
25 mouse 229681 St7l suppression of tumorigenici... NM_001253703.1 72.9% 72.6% (many diffs)
26 mouse 229681 St7l suppression of tumorigenici... XM_017319552.1 55.2% 56.1% (many diffs)
27 mouse 229681 St7l suppression of tumorigenici... NR_045578.1 25.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1791
ORF length:
1725
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGACCGTGGC GGCGTGGGTG AAGCCGCAGC TGTTGGAGCG TCTCCTGCAT
121CTGTCCCTGG CCTAAACCCG ACGCTAGGCT GGAGGGAGCG ACTGCGGGCC GGGCTGGCGG
181GGACTGGGGC CTCGTTGTGG TTCGTGGCGG GGCTGGGGCT GCTTTACGCC CTGAGGATCC
241CTTTGAGGCT GTGTGAGAAT TTGGCAGCGG TGACTGTATT TTTAAATTCA TTGACACCCA
301AATTCTATGT GGCACTTACA GGGACCTCTT CATTGATATC AGGACTAATA TTTATATTTG
361AATGGTGGTA CTTCCATAAG CATGGCACAT CTTTTATTGA GCAAGTATCT GTAAGCCATT
421TGCAACCACT GATGGGAGGA ACAGAGAGCA GCATTTCAGA ACCAGGTTCT CCTTCGAGGA
481ACAGAGAAAA TGAAACCAGC AGACAGAATT TGTCAGAATG TAAGGTATGG AGAAACCCTC
541TAAATCTTTT CAGAGGAGCA GAATATAGGA GATACACTTG GGTGACTGGT AAAGAGCCAC
601TTACATACTA TGACATGAAC CTGTCAGCTC AGGACCATCA GACCTTTTTC ACCTGTGACA
661CAGATTTTTT ACGTCCTTCA GACACAGTTA TGCAGAAGGC TTGGAGGGAA AGAAATCCTC
721CAGCTCGAAT CAAAGCAGCC TATCAAGCTT TAGAATTAAA CAATGACTGT GCCACTGCAT
781ATGTTCTACT GGCTGAGGAA GAAGCAACAA CTATTGTAGA TGCTGAAAGG TTATTTAAAC
841AGGCACTCAA GGCAGGAGAA ACAATTTATA GGCAGTCACA GCAGTGCCAG CACCAAAGTC
901CTCAGCATGA AGCTCAACTG AGGAGAGATA CCAATGTACT GGTATATATT AAAAGAAGAT
961TGGCAATGTG TGCAAGAAAA TTAGGAAGAA TAAGAGAAGC AGTAAAAATA ATGAGAGATT
1021TGATGAAAGA ATTTCCTCCT CTTACCATGT TGAACATCCA TGAAAATCTC TTAGAATCAC
1081TTTTAGAATT ACAGGCCTAT CCAGATGTTC AGGCAGTCCT AGCAAAATAT GATGATATAA
1141GCCTTCCAAA GTCAGCAGCA ATCTGTTACA CAGCAGCACT GTTGAAGACA AGGACTGTTT
1201CAGAAAAATT CTCTCCAGAA ACAGCCTCCA GAAGAGGATT AAGCACAGCA GAAATTAATG
1261CCGTGGAAGC AATTCATAGA GCTGTGGAAT TTAATCCTCA TGTTCCAAAA TATTTATTAG
1321AGATGAAAAG TTTAATTTTA CCTCCAGAAC ACATTCTGAA ACGGGGTGAT AGTGAAGCAA
1381TTGCCTATGC TTTCTTTCAT CTTCAGCACT GGAAACGAAT AGAAGGTGCT CTTAATCTGT
1441TACAGTGTAC ATGGGAAGGC ACTTTTAGAA TGATTCCATA CCCGTTAGAG AAAGGACATC
1501TATTTTACCC TTATCCCAGC TGCACAGAGA CGGCTGATAG AGAGCTATTA CCTACCTTTC
1561ATCATGTTTC TGTTTACCCA AAAAAGGAGC TTCCTTTGTT CATCCATTTC ACAGCAGGAT
1621TTTGCTCTTC TACAGCAATG ATAGCCATTC TCACTCACCA GTTTCCTGAA ATCATGGGTA
1681TTTTTGCTAA AGCTGTGCTG GGACTCTGGT GCCCCCAACC CTGGGCATCC TCAGGCTTTG
1741AGGAGAATAC ACAGGATTTG AAGTCAGAAG ACCTAGGTTT GAGTTCTGGC TGCCCAACTT
1801TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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