Construct: ORF ccsbBroadEn_03489

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003716.1_s300c1, BRDN0000455497
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COMMD4 (54939)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54939 COMMD4 COMM domain containing 4 NM_017828.5 100% 100%
2 human 54939 COMMD4 COMM domain containing 4 NM_001321848.2 90.3% 87.4% (many diffs)
3 human 54939 COMMD4 COMM domain containing 4 NM_001321847.2 88.9% 88.9% 75_76ins66
4 human 54939 COMMD4 COMM domain containing 4 NM_001321844.2 87.9% 87.9% 0_1ins72
5 human 54939 COMMD4 COMM domain containing 4 XM_005254509.3 87.9% 87.6% 1_78del;80G>T;82_84delGCT
6 human 54939 COMMD4 COMM domain containing 4 XM_011521739.2 86.7% 86.4% 1_91delinsA
7 human 54939 COMMD4 COMM domain containing 4 XM_024449968.1 78.9% 78.9% 300_458del
8 human 54939 COMMD4 COMM domain containing 4 XM_005254510.3 78.1% 77.8% (many diffs)
9 human 54939 COMMD4 COMM domain containing 4 XM_011521740.1 77.1% 76.8% 1_91delinsA;165_166ins66
10 human 54939 COMMD4 COMM domain containing 4 NM_001321845.2 76.5% 76.3% 0_1ins139;3delG
11 human 54939 COMMD4 COMM domain containing 4 NM_001284377.2 70.3% 69.8% 382_383ins177
12 human 54939 COMMD4 COMM domain containing 4 NM_001284379.2 62.1% 58.4% (many diffs)
13 human 54939 COMMD4 COMM domain containing 4 XM_011521741.2 60.9% 60.2% 1_91delinsA;472_473ins177
14 human 54939 COMMD4 COMM domain containing 4 NR_104313.2 60.8% 1_27del;207_208ins52;573_843del
15 human 54939 COMMD4 COMM domain containing 4 NM_001321846.2 59.2% 58.7% 75_76ins66;316_317ins177
16 human 54939 COMMD4 COMM domain containing 4 NM_001284378.2 56.7% 56.7% 299_300ins258
17 human 54939 COMMD4 COMM domain containing 4 XM_017022385.1 51.3% 50.6% 1_91delinsA;165_166ins66;406_407ins177
18 human 112268145 LOC112268145 uncharacterized LOC112268145 XM_024450114.1 41.6% 30.2% (many diffs)
19 human 732265 COMMD4P2 COMM domain containing 4 ps... NR_160652.1 38.6% (many diffs)
20 human 54939 COMMD4 COMM domain containing 4 NR_104312.2 18.4% 1_27del;625_3241del
21 mouse 66199 Commd4 COMM domain containing 4 NM_025417.2 86.9% 90.9% (many diffs)
22 mouse 66199 Commd4 COMM domain containing 4 XM_006511343.2 77.2% 79.8% (many diffs)
23 mouse 66199 Commd4 COMM domain containing 4 XR_379435.2 57.1% (many diffs)
24 mouse 66199 Commd4 COMM domain containing 4 XR_003947970.1 57% (many diffs)
25 mouse 66199 Commd4 COMM domain containing 4 XR_003947969.1 55.1% (many diffs)
26 mouse 66199 Commd4 COMM domain containing 4 XR_379436.3 54% (many diffs)
27 mouse 66199 Commd4 COMM domain containing 4 XR_003947971.1 50.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
666
ORF length:
597
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAGGTTCCGG TTCTGTGGTG ATCTGGACTG TCCCGACTGG GTCCTGGCAG
121AAATCAGCAC GCTGGCCAAG ATGTCCTCTG TGAAGTTGCG GCTGCTCTGC AGCCAGGTAC
181TAAAGGAGCT GCTGGGACAG GGGATTGATT ATGAGAAGAT CCTGAAGCTC ACGGCTGACG
241CCAAGTTTGA GTCAGGCGAT GTGAAGGCCA CAGTGGCAGT GCTGAGTTTC ATCCTCTCCA
301GTGCGGCCAA GCACAGTGTC GATGGCGAAT CCTTGTCCAG TGAACTGCAG CAGCTGGGGC
361TGCCCAAAGA GCACGCGGCC AGCCTGTGCC GCTGTTATGA GGAGAAGCAA AGCCCCTTGC
421AGAAGCACTT GCGGGTCTGC AGCCTACGCA TGAATAGGTT GGCAGGTGTG GGCTGGCGGG
481TGGACTACAC CCTGAGCTCC AGCCTGCTGC AATCCGTGGA AGAGCCCATG GTGCACCTGC
541GGCTGGAGGT GGCAGCTGCC CCAGGGACCC CAGCCCAGCC TGTTGCCATG TCCCTCTCAG
601CAGACAAGTT CCAGGTCCTC CTGGCAGAAC TGAAGCAGGC CCAGACCCTG ATGAGCTCCC
661TGGGCTTGCC AACTTTCTTG TACAAAGTTG Gcattataag aaagcattgc ttatcaattt
721gttgcaacga ac

Download FASTA (ORF) (Full)