Construct: ORF ccsbBroadEn_03574

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010308.1_s300c1, BRDN0000391318
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FBXW7 (55294)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55294 FBXW7 F-box and WD repeat domain ... NM_001349798.2 100% 100%
2 human 55294 FBXW7 F-box and WD repeat domain ... NM_033632.3 100% 100%
3 human 55294 FBXW7 F-box and WD repeat domain ... XM_011532084.2 100% 100%
4 human 55294 FBXW7 F-box and WD repeat domain ... XM_011532085.2 100% 100%
5 human 55294 FBXW7 F-box and WD repeat domain ... XM_024454121.1 100% 100%
6 human 55294 FBXW7 F-box and WD repeat domain ... XM_024454122.1 100% 100%
7 human 55294 FBXW7 F-box and WD repeat domain ... XM_024454123.1 100% 100%
8 human 55294 FBXW7 F-box and WD repeat domain ... XM_024454124.1 100% 100%
9 human 55294 FBXW7 F-box and WD repeat domain ... NM_018315.5 80.8% 71.9% (many diffs)
10 human 55294 FBXW7 F-box and WD repeat domain ... XM_011532086.2 80.8% 77.8% 0_1ins262;240_417del
11 human 55294 FBXW7 F-box and WD repeat domain ... XM_011532087.2 80.8% 77.8% 0_1ins262;240_417del
12 human 55294 FBXW7 F-box and WD repeat domain ... XM_024454125.1 80.8% 77.8% 0_1ins262;240_417del
13 human 55294 FBXW7 F-box and WD repeat domain ... NM_001013415.2 80.6% 75% (many diffs)
14 human 55294 FBXW7 F-box and WD repeat domain ... XM_011532088.2 76.3% 76.3% 0_1ins501
15 human 55294 FBXW7 F-box and WD repeat domain ... XM_024454126.1 76.3% 76.3% 0_1ins501
16 human 55294 FBXW7 F-box and WD repeat domain ... NM_001257069.1 24% 23.7% (many diffs)
17 mouse 50754 Fbxw7 F-box and WD-40 domain prot... NM_001177773.1 90.7% 96% (many diffs)
18 mouse 50754 Fbxw7 F-box and WD-40 domain prot... NM_001177774.1 90.7% 96% (many diffs)
19 mouse 50754 Fbxw7 F-box and WD-40 domain prot... XM_006501656.3 90.7% 96% (many diffs)
20 mouse 50754 Fbxw7 F-box and WD-40 domain prot... XM_006501657.3 90.7% 96% (many diffs)
21 mouse 50754 Fbxw7 F-box and WD-40 domain prot... NM_080428.3 75.8% 71.3% (many diffs)
22 mouse 50754 Fbxw7 F-box and WD-40 domain prot... XM_006501658.2 75.1% 75.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2190
ORF length:
2121
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAATCAGGAA CTGCTCTCTG TGGGCAGCAA AAGACGACGA ACTGGAGGCT
121CTCTGAGAGG TAACCCTTCC TCAAGCCAGG TAGATGAAGA ACAGATGAAT CGTGTGGTAG
181AGGAGGAACA GCAACAGCAA CTCAGACAAC AAGAGGAGGA GCACACTGCA AGGAATGGTG
241AAGTTGTTGG AGTAGAACCT AGACCTGGAG GCCAAAATGA TTCCCAGCAA GGACAGTTGG
301AAGAAAACAA TAATAGATTT ATTTCGGTAG ATGAGGACTC CTCAGGAAAC CAAGAAGAAC
361AAGAGGAAGA TGAAGAACAT GCTGGTGAAC AAGATGAGGA GGATGAGGAG GAGGAGGAGA
421TGGACCAGGA GAGTGACGAT TTTGATCAGT CTGATGATAG TAGCAGAGAA GATGAACATA
481CACATACTAA CAGTGTCACG AACTCCAGTA GTATTGTGGA CCTGCCCGTT CACCAACTCT
541CCTCCCCATT CTATACAAAA ACAACAAAAA TGAAAAGAAA GTTGGACCAT GGTTCTGAGG
601TCCGCTCTTT TTCTTTGGGA AAGAAACCAT GCAAAGTCTC AGAATATACA AGTACCACTG
661GGCTTGTACC ATGTTCAGCA ACACCAACAA CTTTTGGGGA CCTCAGAGCA GCCAATGGCC
721AAGGGCAACA ACGACGCCGA ATTACATCTG TCCAGCCACC TACAGGCCTC CAGGAATGGC
781TAAAAATGTT TCAGAGCTGG AGTGGACCAG AGAAATTGCT TGCTTTAGAT GAACTCATTG
841ATAGTTGTGA ACCAACACAA GTAAAACATA TGATGCAAGT GATAGAACCC CAGTTTCAAC
901GAGACTTCAT TTCATTGCTC CCTAAAGAGT TGGCACTCTA TGTGCTTTCA TTCCTGGAAC
961CCAAAGACCT GCTACAAGCA GCTCAGACAT GTCGCTACTG GAGAATTTTG GCTGAAGACA
1021ACCTTCTCTG GAGAGAGAAA TGCAAAGAAG AGGGGATTGA TGAACCATTG CACATCAAGA
1081GAAGAAAAGT AATAAAACCA GGTTTCATAC ACAGTCCATG GAAAAGTGCA TACATCAGAC
1141AGCACAGAAT TGATACTAAC TGGAGGCGAG GAGAACTCAA ATCTCCTAAG GTGCTGAAAG
1201GACATGATGA TCATGTGATC ACATGCTTAC AGTTTTGTGG TAACCGAATA GTTAGTGGTT
1261CTGATGACAA CACTTTAAAA GTTTGGTCAG CAGTCACAGG CAAATGTCTG AGAACATTAG
1321TGGGACATAC AGGTGGAGTA TGGTCATCAC AAATGAGAGA CAACATCATC ATTAGTGGAT
1381CTACAGATCG GACACTCAAA GTGTGGAATG CAGAGACTGG AGAATGTATA CACACCTTAT
1441ATGGGCATAC TTCCACTGTG CGTTGTATGC ATCTTCATGA AAAAAGAGTT GTTAGCGGTT
1501CTCGAGATGC CACTCTTAGG GTTTGGGATA TTGAGACAGG CCAGTGTTTA CATGTTTTGA
1561TGGGTCATGT TGCAGCAGTC CGCTGTGTTC AATATGATGG CAGGAGGGTT GTTAGTGGAG
1621CATATGATTT TATGGTAAAG GTGTGGGATC CAGAGACTGA AACCTGTCTA CACACGTTGC
1681AGGGGCATAC TAATAGAGTC TATTCATTAC AGTTTGATGG TATCCATGTG GTGAGTGGAT
1741CTCTTGATAC ATCAATCCGT GTTTGGGATG TGGAGACAGG GAATTGCATT CACACGTTAA
1801CAGGGCACCA GTCGTTAACA AGTGGAATGG AACTCAAAGA CAATATTCTT GTCTCTGGGA
1861ATGCAGATTC TACAGTTAAA ATCTGGGATA TCAAAACAGG ACAGTGTTTA CAAACATTGC
1921AAGGTCCCAA CAAGCATCAG AGTGCTGTGA CCTGTTTACA GTTCAACAAG AACTTTGTAA
1981TTACCAGCTC AGATGATGGA ACTGTAAAAC TATGGGACTT GAAAACGGGT GAATTTATTC
2041GAAACCTAGT CACATTGGAG AGTGGGGGGA GTGGGGGAGT TGTGTGGCGG ATCAGAGCCT
2101CAAACACAAA GCTGGTGTGT GCAGTTGGGA GTCGGAATGG GACTGAAGAA ACCAAGCTGC
2161TGGTGCTGGA CTTTGATGTG GACATGAAGT TGCCAACTTT CTTGTACAAA GTtggcatta
2221taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)

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