Construct: ORF ccsbBroadEn_03652
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008842.1_s300c1, BRDN0000390867
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- EXOC2 (55770)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55770 | EXOC2 | exocyst complex component 2 | NM_018303.6 | 100% | 100% | |
| 2 | human | 55770 | EXOC2 | exocyst complex component 2 | XM_017011018.1 | 100% | 100% | |
| 3 | human | 55770 | EXOC2 | exocyst complex component 2 | XM_017011019.1 | 100% | 100% | |
| 4 | human | 55770 | EXOC2 | exocyst complex component 2 | XM_017011020.1 | 100% | 100% | |
| 5 | human | 55770 | EXOC2 | exocyst complex component 2 | XM_017011021.1 | 100% | 100% | |
| 6 | human | 55770 | EXOC2 | exocyst complex component 2 | XM_017011022.1 | 100% | 100% | |
| 7 | human | 55770 | EXOC2 | exocyst complex component 2 | XM_017011023.1 | 100% | 100% | |
| 8 | human | 55770 | EXOC2 | exocyst complex component 2 | XM_017011024.1 | 100% | 100% | |
| 9 | human | 55770 | EXOC2 | exocyst complex component 2 | XM_017011025.1 | 89% | 84.3% | (many diffs) |
| 10 | human | 55770 | EXOC2 | exocyst complex component 2 | XM_017011026.1 | 80.6% | 80.7% | 2239A>G;2242_2248delTTAATCC;2250_2251ins529 |
| 11 | human | 55770 | EXOC2 | exocyst complex component 2 | NR_073064.1 | 59.5% | 1_328del;3101_4652del | |
| 12 | mouse | 66482 | Exoc2 | exocyst complex component 2 | NM_025588.2 | 87.3% | 93.6% | (many diffs) |
| 13 | mouse | 66482 | Exoc2 | exocyst complex component 2 | XM_006516726.2 | 87.3% | 93.6% | (many diffs) |
| 14 | mouse | 66482 | Exoc2 | exocyst complex component 2 | XM_011244328.1 | 83% | 88.7% | (many diffs) |
| 15 | mouse | 66482 | Exoc2 | exocyst complex component 2 | XM_011244326.2 | 82.5% | 88.3% | (many diffs) |
| 16 | mouse | 66482 | Exoc2 | exocyst complex component 2 | XM_011244327.2 | 82.5% | 88.3% | (many diffs) |
| 17 | mouse | 66482 | Exoc2 | exocyst complex component 2 | XM_017315564.1 | 76.3% | 80.8% | (many diffs) |
| 18 | mouse | 66482 | Exoc2 | exocyst complex component 2 | XM_017315565.1 | 75.5% | 81% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2838
- ORF length:
- 2772
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TCGATCACGA CAACCCCCCC TTGTGACCGG CATCTCTCCA AATGAAGGGA 121 TACCATGGAC GAAGGTCACA ATCAGGGGAG AAAATCTGGG GACTGGCCCC ACCGACCTCA 181 TAGGCTTGAC CATTTGTGGA CATAATTGCC TCCTGACGGC AGAATGGATG TCTGCAAGTA 241 AAATAGTATG TCGAGTGGGA CAAGCCAAAA ATGACAAAGG AGACATTATT GTCACCACTA 301 AGTCAGGTGG CAGAGGAACC TCAACAGTCT CTTTCAAGCT ACTCAAACCT GAGAAAATAG 361 GCATTTTGGA TCAGTCTGCT GTGTGGGTTG ATGAAATGAA TTATTATGAT ATGCGCACTG 421 ACAGGAACAA AGGAATTCCG CCCTTGTCCT TACGTCCTGC TAACCCGCTT GGCATTGAGA 481 TTGAAAAAAG TAAATTTTCG CAGAAGGACT TAGAAATGCT ATTCCATGGA ATGAGTGCTG 541 ATTTTACAAG TGAGAATTTC TCAGCAGCCT GGTATCTTAT AGAGAATCAC TCAAACACCA 601 GTTTTGAGCA GCTCAAAATG GCAGTCACCA ACCTAAAGAG ACAGGCTAAC AAGAAGAGTG 661 AGGGCAGCCT GGCCTATGTG AAAGGCGGTC TCAGTACATT CTTCGAAGCA CAGGATGCCC 721 TCTCAGCCAT CCATCAAAAA CTAGAAGCAG ATGGAACGGA AAAAGTAGAA GGATCCATGA 781 CGCAGAAACT GGAGAATGTT CTGAACAGAG CAAGTAATAC TGCAGACACA TTGTTTCAAG 841 AAGTATTAGG TCGGAAAGAC AAGGCAGATT CCACTAGAAA TGCACTCAAT GTGCTTCAGC 901 GATTTAAGTT TCTTTTCAAC CTTCCTCTAA ATATTGAAAG GAATATTCAA AAGGGTGATT 961 ATGATGTGGT TATTAATGAT TATGAAAAGG CCAAGTCACT TTTTGGGAAA ACGGAGGTGC 1021 AAGTTTTCAA GAAATATTAT GCTGAAGTAG AAACAAGGAT TGAAGCTTTA AGAGAATTAC 1081 TTCTGGATAA ATTGCTTGAG ACACCATCAA CTTTACATGA CCAAAAACGT TACATAAGGT 1141 ACCTGTCTGA CCTTCATGCG TCTGGTGACC CTGCTTGGCA ATGCATTGGA GCCCAACACA 1201 AGTGGATCCT TCAGCTCATG CACAGTTGCA AAGAGGGCTA CGTGAAAGAT CTGAAAGGTA 1261 ACCCAGGCCT GCACAGTCCC ATGTTGGATC TTGATAATGA TACACGTCCC TCAGTGTTGG 1321 GCCATCTCAG TCAGACAGCG TCCCTGAAGA GGGGCAGCAG CTTTCAGTCT GGTCGAGACG 1381 ACACGTGGAG ATACAAAACT CCCCACAGGG TGGCCTTTGT TGAAAAATTG ACAAAACTCG 1441 TCTTGAGCCA GCTGCCTAAC TTCTGGAAAC TCTGGATCTC CTACGTTAAT GGAAGCCTCT 1501 TCAGTGAGAC TGCTGAGAAG TCAGGCCAGA TTGAAAGATC AAAGAATGTA AGGCAAAGAC 1561 AAAATGATTT TAAGAAAATG ATTCAGGAAG TAATGCACTC CCTGGTGAAG CTTACCCGCG 1621 GAGCCCTGCT TCCCCTCAGC ATCCGGGATG GGGAAGCCAA GCAGTACGGA GGCTGGGAGG 1681 TGAAGTGCGA GCTCTCCGGA CAGTGGCTCG CTCACGCCAT CCAGACTGTA AGACTTACTC 1741 ATGAATCGTT GACTGCCCTT GAAATTCCTA ATGACCTGTT ACAGACTATC CAGGATCTCA 1801 TCTTGGATCT CCGAGTACGT TGCGTAATGG CCACGTTGCA GCACACGGCG GAAGAAATAA 1861 AGAGATTAGC TGAAAAAGAA GACTGGATTG TTGACAATGA AGGACTGACT TCTCTACCAT 1921 GTCAGTTTGA ACAGTGCATC GTGTGTTCTC TGCAGTCACT GAAGGGGGTT CTGGAGTGCA 1981 AGCCGGGAGA GGCCAGTGTC TTCCAACAAC CTAAAACACA GGAGGAGGTT TGCCAGCTAA 2041 GCATCAATAT AATGCAGGTT TTTATATACT GTCTGGAACA GTTGAGCACC AAGCCTGATG 2101 CAGATATAGA TACTACACAT CTCTCTGTTG ATGTTTCTTC CCCTGACTTG TTTGGAAGTA 2161 TCCATGAAGA CTTCAGCTTG ACCTCAGAAC AGCGCCTTTT GATAGTCCTA AGTAATTGCT 2221 GCTATCTAGA ACGTCACACC TTCCTAAATA TCGCAGAACA TTTTGAAAAG CACAACTTCC 2281 AGGGAATAGA AAAAATCACA CAGGTTAGCA TGGCCTCATT GAAAGAACTA GATCAAAGAC 2341 TCTTTGAAAA TTACATCGAG TTGAAAGCAG ATCCCATCGT TGGCTCCTTA GAACCTGGAA 2401 TTTATGCAGG ATATTTTGAT TGGAAGGACT GCCTGCCTCC AACAGGTGTC AGAAACTATT 2461 TAAAAGAAGC ACTGGTGAAT ATAATTGCCG TGCATGCAGA GGTGTTCACC ATTTCCAAAG 2521 AACTGGTCCC TCGGGTACTA TCCAAGGTGA TAGAAGCAGT TTCTGAAGAG CTCAGTCGAC 2581 TGATGCAGTG TGTTTCATCC TTCAGCAAAA ATGGAGCTTT ACAGGCGAGA CTTGAAATCT 2641 GTGCTTTGAG GGACACTGTG GCTGTTTACC TGACACCCGA AAGCAAGTCA AGTTTTAAGC 2701 AGGCTTTGGA AGCCCTGCCC CAGCTTTCCA GTGGAGCAGA TAAAAAGTTA CTGGAAGAGC 2761 TCCTGAACAA GTTCAAGAGT AGCATGCACT TGCAGCTCAC CTGTTTCCAA GCAGCTTCTT 2821 CAACCATGAT GAAAACATAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 2881 gcttatcaat ttgttgcaac gaac