Construct: ORF ccsbBroadEn_03707

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005982.1_s300c1, BRDN0000398163
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHA10 (56139)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56139 PCDHA10 protocadherin alpha 10 NM_031860.3 100% 100%
2 human 56142 PCDHA6 protocadherin alpha 6 NM_031849.3 83% 81.6% (many diffs)
3 human 56139 PCDHA10 protocadherin alpha 10 NM_018901.4 72.2% 72.2% 1598_2386del
4 human 56139 PCDHA10 protocadherin alpha 10 NM_031859.3 71.4% 61.3% (many diffs)
5 human 56137 PCDHA12 protocadherin alpha 12 NM_018903.4 60.7% 60.2% (many diffs)
6 human 56143 PCDHA5 protocadherin alpha 5 NM_018908.3 60.6% 59.3% (many diffs)
7 human 56142 PCDHA6 protocadherin alpha 6 NM_018909.4 60.3% 58.9% (many diffs)
8 human 56144 PCDHA4 protocadherin alpha 4 NM_018907.4 60% 58.4% (many diffs)
9 human 56145 PCDHA3 protocadherin alpha 3 NM_018906.3 59.7% 57.7% (many diffs)
10 human 56138 PCDHA11 protocadherin alpha 11 NM_018902.4 59.7% 58.7% (many diffs)
11 human 56140 PCDHA8 protocadherin alpha 8 NM_018911.3 59.5% 58.6% (many diffs)
12 human 9752 PCDHA9 protocadherin alpha 9 NM_031857.1 59.5% 59.4% (many diffs)
13 mouse 192161 Pcdha9 protocadherin alpha 9 NM_138661.1 60.7% 60.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2124
ORF length:
2055
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGTTTCCAGA TGTAGCTGCC TGGGGGTCCA GTGTCTGCTG CTCTCGCTTC
121TTCTCCTCGC AGCCTGGGAG GTGGGGAGCG GCCAGCTCCA CTACTCAGTC TACGAGGAGG
181CCAGACACGG CACCTTCGTG GGCCGCATCG CGCAGGACCT GGGGCTGGAG CTGGCGGAGC
241TGGTGCAGCG CCTGTTCCGG GTGGCGTCCA AAAGACACGG GGACCTTCTG GAGGTAAATC
301TGCAGAATGG CATTTTGTTT GTGAATTCTC GGATTGACCG CGAGGAGCTG TGCGGGCGGA
361GCGTGGAGTG CAGCATCCAC CTGGAGGTGA TCGTGGACAG GCCGCTGCAG GTTTTCCATG
421TGGACGTGGA AGTGAAGGAC ATTAACGACA ACCCGCCCAG GTTCTCCGTA ACAGAACAAA
481AGCTCTCAAT ACCTGAATCC AGACTGCTTG ACTCTCGATT TCCACTAGAA GGCGCATCTG
541ATGCGGATGT TGGAGAGAAC GCATTGCTTA CTTACAAACT CAGTCCAAAT GAGTATTTTG
601TTCTTGATAT TATAAACAAA AAAGACAAAG ACAAATTCCC AGTGCTTGTT CTGCGGAAGC
661TGCTGGATCG TGAAGAAAAT CCTCAGCTAA AGTTGTTGTT GACAGCAACT GATGGAGGCA
721AACCTGAATT TACCGGATCT GTTTCTCTGC TGATCCTGGT GTTAGATGCC AATGATAACG
781CCCCTATCTT TGACAGACCG GTTTATGAAG TTAAGATGTA TGAAAATCAA GTGAACCAAA
841CATTAGTAAT ACGGCTCAAC GCTTCTGATT CGGATGAAGG AATAAACAAG GAAATGATGT
901ATTCATTTAG CTCTTTGGTC CCACCCACGA TAAGAAGGAA ATTTTGGATA AACGAAAGGA
961CGGGAGAAAT AAAAGTAAAT GATGCTATTG ACTTTGAGGA CAGTAACACT TATGAAATTC
1021ATGTAGATGT TACAGATAAG GGAAACCCAC CTATGGTTGG TCACTGCACG GTCCTAGTGG
1081AACTACTGGA TGAAAATGAT AATTCACCTG AGGTGATTGT CACTTCTCTG TCTCTCCCAG
1141TGAAAGAAGA TGCTCAAGTG GGCACCGTCA TTGCCCTAAT CAGCGTTTCT GACCATGATT
1201CAGGAGCCAA CGGACAGGTC ACCTGCTCTC TGACGCCTCA CGTTCCGTTC AAGCTGGTGT
1261CCACCTACAA GAATTACTAC TCATTGGTGC TGGACAGCGC TCTGGACCGC GAGAGGGTGT
1321CGGCCTATGA GCTGGTGGTG ACCGCGCGGG ACGGGGGCTC GCCTCCGCTG TGGGCCACGG
1381CCAGCGTGTC TGTGGAGGTG GCCGACGTGA ACGACAACGC GCCTGCGTTC GCGCAGTCCG
1441AGTACACGGT GTTCGTGAAG GAGAACAACC CGCCAGGCTG CCACATCTTC ACGGTGTCTG
1501CGTGGGACGC GGACGCGCAG GAGAACGCCC TGGTGTCCTA CTCTCTGGTG GAGCGGCGGT
1561TGGGCGAGCG CTCGCTGTCG AGCTACGTGT CGGTGCACGC GGAGAGCGGC AAGGTGTACG
1621CGCTGCAGCC GCTGGACCAC GAGGAGCTGG AGCTGCTACA GTTCCAGCCA CGACAGCCCA
1681ACCCTGACTG GCGTTACTCT GCCTCCCTGA GAGCAGGCAT GCACAGCTCT GTGCACCTAG
1741AGGAGGCTGG CATTCTACGG GCTGGTCCAG GAGGGCCTGA TCAGCAGTGG CCAACAGTAT
1801CCAGTGCAAC ACCAGAACCA GAGGCAGGAG AAGTGTCCCC TCCAGTCGGT GCGGGTGTCA
1861ACAGCAACAG CTGGACCTTT AAATACGGAC CAGGCAACCC CAAACAATCC GGTCCCGGTG
1921AGTTGCCCGA CAAATTCATT ATCCCAGGAT CTCCTGCAAT CATCTCCATC CGGCAGGAGC
1981CTACTAACAG CCAAATTGAC AAAAGTGACT TCATAACCTT CGGCAAAAAG GAGGAGACCA
2041AGAAAAAGAA GAAAAAGAAG AAGGGTAACA AGACCCAGGA GAAAAAAGAG AAAGGGAACA
2101GCACGACTGA CAACAGTGAC CAGTTGCCAA CTTTCTTGTA CAAAGTtggc attataagaa
2161agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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