Construct: ORF ccsbBroadEn_03868

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004481.1_s300c1, BRDN0000457195
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RBM25 (58517)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 58517 RBM25 RNA binding motif protein 25 NM_021239.3 100% 100%
2 human 58517 RBM25 RNA binding motif protein 25 XM_011537044.3 100% 100%
3 human 58517 RBM25 RNA binding motif protein 25 XM_024449680.1 75.6% 75.6% 0_1ins615
4 human 58517 RBM25 RNA binding motif protein 25 XR_943501.3 55.5% 1_189del;2206_2424del;2938_4549del
5 mouse 67039 Rbm25 RNA binding motif protein 25 NM_027349.3 92% 99.1% (many diffs)
6 mouse 67039 Rbm25 RNA binding motif protein 25 XM_006516167.3 92% 99.1% (many diffs)
7 mouse 67039 Rbm25 RNA binding motif protein 25 XM_006516168.3 92% 99.1% (many diffs)
8 mouse 67039 Rbm25 RNA binding motif protein 25 XM_006516164.3 89.9% 96.9% (many diffs)
9 mouse 67039 Rbm25 RNA binding motif protein 25 XM_006516165.3 89.9% 96.9% (many diffs)
10 mouse 67039 Rbm25 RNA binding motif protein 25 XM_006516166.3 89.9% 96.9% (many diffs)
11 mouse 67039 Rbm25 RNA binding motif protein 25 XM_017315161.1 89.9% 96.9% (many diffs)
12 mouse 67039 Rbm25 RNA binding motif protein 25 XM_006516169.3 70% 75% (many diffs)
13 mouse 67039 Rbm25 RNA binding motif protein 25 XM_017315162.1 70% 75% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2598
ORF length:
2529
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCTTTTCCA CCTCATTTGA ATCGCCCTCC CATGGGAATC CCAGCACTCC
121CACCAGGGAT CCCACCCCCG CAGTTTCCAG GATTTCCTCC ACCTGTACCT CCAGGGACCC
181CAATGATTCC TGTACCAATG AGCATTATGG CTCCTGCTCC AACTGTCTTA GTACCCACTG
241TGTCTATGGT TGGAAAGCAT TTGGGCGCAA GAAAGGATCA TCCAGGCTTA AAGGCTAAAG
301AAAATGATGA AAATTGTGGT CCTACTACCA CTGTTTTTGT TGGCAACATT TCCGAGAAAG
361CTTCAGACAT GCTTATAAGA CAACTCTTAG CTAAATGTGG TTTGGTTTTG AGCTGGAAGA
421GAGTACAAGG TGCTTCCGGA AAGCTTCAAG CCTTCGGATT CTGTGAGTAC AAGGAGCCAG
481AATCTACCCT CCGTGCACTC AGATTATTAC ATGACCTGCA AATTGGAGAG AAAAAGCTAC
541TCGTTAAAGT TGATGCAAAG ACAAAGGCAC AGCTGGATGA ATGGAAAGCA AAGAAGAAAG
601CTTCTAATGG GAATGCAAGG CCAGAAACTG TCACTAATGA CGATGAAGAA GCCTTGGATG
661AAGAAACAAA GAGGAGAGAT CAGATGATTA AAGGGGCTAT TGAAGTTTTA ATTCGTGAAT
721ACTCCAGTGA GCTAAATGCC CCCTCACAGG AATCTGATTC TCACCCCAGG AAGAAGAAGA
781AGGAAAAGAA GGAGGACATT TTCCGCAGAT TTCCAGTGGC CCCACTGATC CCTTATCCAC
841TCATCACTAA GGAGGATATA AATGCTATAG AAATGGAAGA AGACAAAAGA GACCTGATAT
901CTCGAGAGAT CAGCAAATTC AGAGACACAC ATAAGAAACT GGAAGAAGAG AAAGGCAAAA
961AGGAAAAAGA AAGACAGGAA ATTGAGAAAG AACGGAGAGA AAGAGAGAGG GAGCGTGAAA
1021GGGAACGAGA AAGGCGAGAA CGGGAACGAG AAAGGGAAAG AGAACGTGAA CGAGAAAAGG
1081AGAAAGAACG GGAGCGGGAA CGAGAACGGG ATAGGGACCG TGACCGGACA AAAGAGAGAG
1141ACCGAGATCG GGATCGAGAG AGAGATCGTG ACCGGGATAG AGAAAGGAGC TCAGATCGTA
1201ATAAGGATCG CAGTCGATCA AGAGAAAAAA GCAGAGATCG TGAAAGGGAA CGAGAGCGGG
1261AAAGAGAGAG AGAGAGAGAA CGAGAGCGAG AACGAGAACG GGAGCGAGAG AGAGAGCGAG
1321AGAGGGAACG GGAGCGAGAA AGAGAAAAAG ACAAAAAACG GGACCGAGAA GAAGATGAAG
1381AAGATGCATA CGAACGAAGA AAACTTGAAA GAAAACTCCG AGAGAAAGAA GCTGCTTATC
1441AAGAGCGCCT TAAGAATTGG GAAATCAGAG AACGAAAGAA AACCCGGGAA TATGAGAAAG
1501AAGCTGAAAG AGAAGAAGAA AGAAGAAGAG AAATGGCCAA AGAAGCTAAA CGACTAAAAG
1561AATTCTTAGA AGACTATGAT GATGATAGAG ATGACCCCAA ATATTACAGA GGAAGTGCTC
1621TTCAGAAAAG GTTGCGTGAT AGAGAAAAGG AAATGGAAGC AGATGAACGA GATAGGAAGA
1681GAGAGAAGGA GGAGCTTGAG GAAATCAGGC AGCGCCTTCT GGCAGAAGGG CATCCAGATC
1741CAGATGCAGA GCTCCAGAGG ATGGAACAAG AGGCTGAGAG GCGCAGGCAG CCACAAATAA
1801AGCAAGAGCC AGAATCAGAA GAGGAGGAAG AAGAAAAGCA AGAAAAAGAA GAAAAACGAG
1861AAGAACCCAT GGAAGAGGAA GAGGAGCCAG AGCAAAAGCC TTGTCTGAAA CCTACTCTGA
1921GGCCCATCAG CTCTGCTCCA TCTGTTTCCT CTGCCAGTGG CAATGCAACA CCTAACACTC
1981CTGGGGATGA GTCTCCCTGT GGTATTATTA TTCCTCATGA AAACTCACCA GATCAACAGC
2041AACCTGAGGA GCATAGGCCA AAAATAGGAC TAAGTCTTAA ACTGGGTGCT TCCAATAGTC
2101CTGGTCAGCC TAATTCTGTG AAGAGAAAGA AACTACCTGT AGATAGTGTC TTTAACAAAT
2161TTGAGGATGA AGACAGTGAT GACGTACCCC GAAAAAGGAA ACTGGTTCCC TTGGATTATG
2221GTGAAGATGA TAAAAATGCA ACCAAAGGCA CTGTAAACAC TGAAGAAAAG CGTAAACACA
2281TTAAGAGTCT CATTGAGAAA ATCCCTACAG CCAAACCTGA GCTCTTCGCT TATCCCCTGG
2341ATTGGTCTAT TGTGGATTCT ATACTGATGG AACGTCGAAT TAGACCATGG ATTAATAAGA
2401AAATCATAGA ATATATAGGT GAAGAAGAAG CTACATTAGT TGATTTTGTT TGTTCTAAGG
2461TTATGGCTCA TAGTTCACCC CAGAGCATTT TAGATGATGT TGCCATGGTA CTTGATGAAG
2521AAGCAGAAGT TTTTATAGTC AAAATGTGGA GATTATTGAT ATATGAAACA GAAGCCAAGA
2581AAATTGGTCT TGTGAAGTTG CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt
2641gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)