Construct: ORF ccsbBroadEn_03964
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013129.1_s300c1, BRDN0000396375
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ILRUN (64771)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64771 | ILRUN | inflammation and lipid regu... | NM_024294.4 | 100% | 100% | |
| 2 | human | 64771 | ILRUN | inflammation and lipid regu... | XM_005249298.3 | 96.7% | 96.3% | (many diffs) |
| 3 | human | 64771 | ILRUN | inflammation and lipid regu... | NM_022758.6 | 77.8% | 77.8% | 312_313ins198 |
| 4 | human | 64771 | ILRUN | inflammation and lipid regu... | XR_926300.3 | 15.6% | (many diffs) | |
| 5 | mouse | 224647 | D17Wsu92e | DNA segment, Chr 17, Wayne ... | NM_001033279.3 | 92.1% | 94.9% | (many diffs) |
| 6 | mouse | 224647 | D17Wsu92e | DNA segment, Chr 17, Wayne ... | NM_001044719.2 | 66.7% | 72.1% | (many diffs) |
| 7 | mouse | 224647 | D17Wsu92e | DNA segment, Chr 17, Wayne ... | NM_001271511.1 | 65.3% | 58.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 960
- ORF length:
- 894
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GGGCATGGAC GTAGACCTGG ACCCGGAGCT GATGCAGAAG TTCAGCTGCC 121 TGGGCACCAC CGACAAGGAC GTGCTCATCT CCGAGTTCCA GAGGCTGCTC GGCTTCCAGC 181 TCAATCCTGC CGGTTGCGCC TTCTTCCTGG ACATGACCAA CTGGAACCTA CAAGCAGCAA 241 TTGGCGCCTA TTATGACTTT GAGAGCCCAA ACATCAGTGT GCCCTCTATG TCCTTTGTTG 301 AAGATGTCAC CATAGGAGAA GGGGAGTCAA TACCTCCGGA TACTCAGTTT GTAAAAACAT 361 GGCGGATCCA GAATTCTGGG GCAGAGGCCT GGCCTCCAGG GGTTTGTCTT AAATATGTCG 421 GGGGAGACCA ATTTGGACAT GTGAACATGG TGATGGTGAG ATCGCTAGAG CCCCAAGAGA 481 TTGCAGATGT CAGCGTCCAG ATGTGCAGCC CCAGCAGAGC AGGAATGTAT CAGGGACAGT 541 GGCGGATGTG CACTGCTACA GGACTCTACT ATGGAGATGT CATCTGGGTG ATTCTCAGTG 601 TGGAGGTGGG TGGACTTTTA GGAGTAACGC AGCAGCTGTC ATCTTTTGAA ACGGAGTTCA 661 ACACACAGCC GCATCGTAAG GTAGAAGGAA ACTTCAACCC TTTTGCCTCT CCCCAAAAGA 721 ACCGACAATC AGATGAAAAC AACTTAAAAG ACCCTGGGGG CTCCGAGTTC GACTCGATCA 781 GCAAAAACAC ATGGGCTCCT GCTCCTGACA CATGGGCTCC TGCTCCTGAC CAAACTGAGC 841 AAGACCAGAA TAGACTGTCA CAGAACTCTG TAAATCTGTC TCCCAGCAGT CACGCAAACA 901 ACTTATCAGT AGTGACTTAC AGTAAGGGGC TCCATGGGCC TTACCCCTTC GGCCAGTCTT 961 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 1021 acgaac