Transcript: Human NM_022758.6

Homo sapiens inflammation and lipid regulator with UBA-like and NBR1-like domains (ILRUN), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-07
Taxon:
Homo sapiens (human)
Gene:
ILRUN (64771)
Length:
4140
CDS:
165..863

Additional Resources:

NCBI RefSeq record:
NM_022758.6
NBCI Gene record:
ILRUN (64771)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_022758.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430606 GCAGCAATTGGCGCCTATTAT pLKO_005 333 CDS 100% 15.000 21.000 N ILRUN n/a
2 TRCN0000419891 TCCGGATACTCAGTTTGTAAA pLKO_005 434 CDS 100% 13.200 18.480 N ILRUN n/a
3 TRCN0000140195 GAGTTCGACTCGATCAGCAAA pLKO.1 666 CDS 100% 4.950 6.930 N ILRUN n/a
4 TRCN0000425743 TTAAACGGGTGTCAGCAAGAA pLKO_005 860 CDS 100% 4.950 6.930 N ILRUN n/a
5 TRCN0000144085 CTTTGTTGAAGATGTCACCAT pLKO.1 392 CDS 100% 2.640 3.696 N ILRUN n/a
6 TRCN0000429469 CATCAGTCTAACAAGTCATTA pLKO_005 1123 3UTR 100% 13.200 9.240 N ILRUN n/a
7 TRCN0000414962 AGAACCGACAATCAGATGAAA pLKO_005 619 CDS 100% 5.625 3.938 N ILRUN n/a
8 TRCN0000145604 CACGCAAACAACTTATCAGTA pLKO.1 792 CDS 100% 4.950 3.465 N ILRUN n/a
9 TRCN0000425236 GAGTAACGCAGCAGCTGTCAT pLKO_005 523 CDS 100% 4.950 3.465 N ILRUN n/a
10 TRCN0000121618 GCCAATGAGTTATCACCCTTT pLKO.1 1453 3UTR 100% 4.050 2.835 N ILRUN n/a
11 TRCN0000143122 CAAGACCAGAATAGACTGTCA pLKO.1 741 CDS 100% 2.640 1.848 N ILRUN n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_022758.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03964 pDONR223 100% 77.8% 77.8% None 312_313ins198 n/a
2 ccsbBroad304_03964 pLX_304 0% 77.8% 77.8% V5 312_313ins198 n/a
3 TRCN0000467794 CTGACCCCTTCAGTACCCGCCGCT pLX_317 43.5% 77.8% 77.8% V5 312_313ins198 n/a
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