Construct: ORF ccsbBroadEn_04146

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014737.1_s300c1, BRDN0000385169
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HDAC11 (79885)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79885 HDAC11 histone deacetylase 11 NM_024827.4 100% 100%
2 human 79885 HDAC11 histone deacetylase 11 XM_005265491.1 91.9% 91.9% 0_1ins84
3 human 79885 HDAC11 histone deacetylase 11 XM_011534131.1 91.9% 91.9% 0_1ins84
4 human 79885 HDAC11 histone deacetylase 11 XM_024453761.1 91.9% 91.9% 0_1ins84
5 human 79885 HDAC11 histone deacetylase 11 NM_001136041.3 85.3% 85.3% 0_1ins84;166_167ins69
6 human 79885 HDAC11 histone deacetylase 11 NM_001330636.2 77.2% 77.2% 247_248ins237
7 human 79885 HDAC11 histone deacetylase 11 XM_006713338.1 77.2% 76.9% 412_413ins237
8 human 79885 HDAC11 histone deacetylase 11 XM_024453762.1 73.1% 72.6% 1_57del;59G>T;469_470ins237
9 human 79885 HDAC11 histone deacetylase 11 XM_011534132.2 69.1% 69.1% 0_1ins84;163_164ins237
10 human 79885 HDAC11 histone deacetylase 11 XM_024453764.1 69.1% 69.1% 0_1ins84;163_164ins237
11 human 79885 HDAC11 histone deacetylase 11 XM_017007234.1 69.1% 68.8% 0_1ins84;328_329ins237
12 human 79885 HDAC11 histone deacetylase 11 XM_024453765.1 69.1% 68.8% 0_1ins84;328_329ins237
13 human 79885 HDAC11 histone deacetylase 11 XM_011534135.1 64.8% 64.8% 0_1ins366
14 human 79885 HDAC11 histone deacetylase 11 XM_024453763.1 61.3% 25.1% (many diffs)
15 mouse 232232 Hdac11 histone deacetylase 11 NM_144919.2 87% 92.2% (many diffs)
16 mouse 232232 Hdac11 histone deacetylase 11 XM_017321536.1 33.7% 33.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1107
ORF length:
1041
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT ACACACAACC CAGCTGTACC AGCATGTGCC AGAGACACGC TGGCCAATCG
121TGTACTCGCC GCGCTACAAC ATCACCTTCA TGGGCCTGGA GAAGCTGCAT CCCTTTGATG
181CCGGAAAATG GGGCAAAGTG ATCAATTTCC TAAAAGAAGA GAAGCTTCTG TCTGACAGCA
241TGCTGGTGGA GGCGCGGGAG GCCTCGGAGG AGGACCTGCT GGTGGTGCAC ACGAGGCGCT
301ATCTTAATGA GCTCAAGTGG TCCTTTGCTG TTGCTACCAT CACAGAAATC CCCCCCGTTA
361TCTTCCTCCC CAACTTCCTT GTGCAGAGGA AGGTGCTGAG GCCCCTTCGG ACCCAGACAG
421GAGGAACCAT AATGGCGGGG AAGCTGGCTG TGGAGCGAGG CTGGGCCATC AACGTGGGGG
481GTGGCTTCCA CCACTGCTCC AGCGACCGTG GCGGGGGCTT CTGTGCCTAT GCGGACATCA
541CGCTCGCCAT CAAGTTTCTG TTTGAGCGTG TGGAGGGCAT CTCCAGGGCT ACCATCATTG
601ATCTTGATGC CCATCAGGGC AATGGGCATG AGCGAGACTT CATGGACGAC AAGCGTGTGT
661ACATCATGGA TGTCTACAAC CGCCACATCT ACCCAGGGGA CCGCTTTGCC AAGCAGGCCA
721TCAGGCGGAA GGTGGAGCTG GAGTGGGGCA CAGAGGATGA TGAGTACCTG GATAAGGTGG
781AGAGGAACAT CAAGAAATCC CTCCAGGAGC ACCTGCCCGA CGTGGTGGTA TACAATGCAG
841GCACCGACAT CCTCGAGGGG GACCGCCTTG GGGGGCTGTC CATCAGCCCA GCGGGCATCG
901TGAAGCGGGA TGAGCTGGTG TTCCGGATGG TCCGTGGCCG CCGGGTGCCC ATCCTTATGG
961TGACCTCAGG CGGGTACCAG AAGCGCACAG CCCGCATCAT TGCTGACTCC ATACTTAATC
1021TGTTTGGCCT GGGGCTCATT GGGCCTGAGT CACCCAGCGT CTCCGCACAG AACTCAGACA
1081CACCGCTGCT TCCCCCTGCA GTGCCCTGCC CAACTTTCTT GTACAAAGTt ggcattataa
1141gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)