Construct: ORF ccsbBroadEn_04165

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004737.1_s300c1, BRDN0000397796
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MINDY3 (80013)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80013 MINDY3 MINDY lysine 48 deubiquitin... NM_024948.4 100% 100%
2 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XM_006717508.2 93.9% 93.9% 798_799ins81
3 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XM_011519690.2 92% 87.5% (many diffs)
4 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XM_017016671.1 86% 81.6% (many diffs)
5 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XM_011519691.2 83.7% 83.5% 1116_1117insGGCTCCAGTGGTCC;1118T>G;1119_1120ins202
6 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XM_011519693.1 66.5% 66% (many diffs)
7 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XM_017016672.1 66.5% 66% (many diffs)
8 human 80013 MINDY3 MINDY lysine 48 deubiquitin... NM_001318330.1 61.1% 61.1% 0_1ins519
9 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XM_005252600.2 61.1% 61.1% 0_1ins519
10 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XM_005252602.2 61.1% 61.1% 0_1ins519
11 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XM_011519694.1 61.1% 61.1% 0_1ins519
12 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XM_017016673.1 61.1% 61.1% 0_1ins519
13 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XM_017016674.1 55% 55% 0_1ins519;279_280ins81
14 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XM_017016675.1 55% 55% 0_1ins519;279_280ins81
15 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XM_017016676.1 55% 55% 0_1ins519;279_280ins81
16 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XR_428647.2 53.2% 1_211del;941_942ins71;1476_2301del
17 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XR_001747205.1 52.5% 1_211del;1239_1240ins88;1459_2284del
18 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XR_930516.2 49.8% 1_211del;941_942ins152;1395_2220del
19 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XR_001747206.1 49.1% (many diffs)
20 human 80013 MINDY3 MINDY lysine 48 deubiquitin... XR_001747207.1 46.1% (many diffs)
21 mouse 66960 Mindy3 MINDY lysine 48 deubiquitin... NM_024185.4 92.5% 95.7% (many diffs)
22 mouse 66960 Mindy3 MINDY lysine 48 deubiquitin... XM_006497522.3 87.1% 90.3% (many diffs)
23 mouse 66960 Mindy3 MINDY lysine 48 deubiquitin... XM_006497523.3 86.5% 89.6% (many diffs)
24 mouse 66960 Mindy3 MINDY lysine 48 deubiquitin... XM_006497524.2 80.8% 84.4% (many diffs)
25 mouse 66960 Mindy3 MINDY lysine 48 deubiquitin... XM_006497525.2 58.7% 62% (many diffs)
26 mouse 66960 Mindy3 MINDY lysine 48 deubiquitin... XM_006497526.3 56.6% 60% (many diffs)
27 mouse 66960 Mindy3 MINDY lysine 48 deubiquitin... XM_006497527.2 56.6% 60% (many diffs)
28 mouse 66960 Mindy3 MINDY lysine 48 deubiquitin... XM_011238985.2 56.6% 60% (many diffs)
29 mouse 66960 Mindy3 MINDY lysine 48 deubiquitin... XR_865931.1 49.3% (many diffs)
30 mouse 66960 Mindy3 MINDY lysine 48 deubiquitin... XM_006497529.2 48.9% 51.2% (many diffs)
31 mouse 66960 Mindy3 MINDY lysine 48 deubiquitin... XR_001783166.1 46% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1401
ORF length:
1335
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC CGAACTGACT AAAGAGCTGA TGGAGCTGGT GTGGGGCACC AAGAGCAGCC
121CCGGTCTCTC GGACACCATT TTCTGCCGCT GGACGCAAGG GTTTGTGTTT AGTGAATCAG
181AGGGATCTGC ATTAGAACAG TTTGAAGGTG GCCCCTGTGC TGTTATTGCA CCTGTTCAGG
241CATTTCTTTT GAAGAAGCTC CTGTTTTCTT CGGAGAAGTC TTCTTGGCGG GATTGTTCAG
301AGGAAGAGCA GAAGGAACTC CTTTGTCATA CCTTGTGTGA TATTTTAGAA AGTGCTTGTT
361GTGACCACTC TGGATCATAC TGCTTGGTTT CATGGTTAAG AGGAAAGACA ACTGAGGAAA
421CTGCTAGTAT TTCTGGGAGT CCTGCAGAGT CTAGTTGCCA AGTGGAACAT TCTTCTGCCT
481TGGCTGTCGA AGAGCTTGGC TTTGAGCGAT TTCATGCATT AATTCAAAAA AGATCGTTCA
541GAAGTTTACC AGAATTAAAA GATGCTGTCT TGGACCAGTA TTCAATGTGG GGAAATAAAT
601TTGGAGTATT GCTTTTTCTG TATTCTGTAT TACTGACAAA GGGCATTGAA AACATAAAAA
661ACGAAATTGA AGATGCAAGT GAACCCTTGA TAGATCCTGT ATATGGACAT GGCAGCCAAA
721GTTTAATTAA TCTCCTGCTG ACGGGACATG CTGTTTCTAA TGTATGGGAT GGTGATAGAG
781AGTGCTCAGG AATGAAACTT CTTGGTATAC ATGAACAAGC AGCAGTAGGA TTTTTAACAC
841TAATGGAAGC TTTAAGATAC TGTAAGGTTG GTTCTTACTT GAAATCTCCA AAATTCCCTA
901TTTGGATTGT TGGCAGTGAG ACTCACCTCA CCGTATTTTT TGCCAAGGAT ATGGCTTTAG
961TTGCCCCTGA AGCTCCTTCA GAACAAGCCA GAAGAGTTTT TCAAACCTAC GACCCAGAAG
1021ATAATGGATT CATACCCGAT TCACTTCTGG AAGATGTGAT GAAAGCATTG GACCTTGTTT
1081CAGATCCTGA ATATATAAAT CTCATGAAGA ATAAATTAGA TCCAGAAGGA TTAGGAATCA
1141TATTATTGGG CCCATTTCTT CAAGAATTTT TTCCTGATCA GGGCTCCAGT GGTCCAGAAT
1201CTTTTACTGT CTACCACTAC AATGGATTGA AGCAGTCAAA TTATAATGAA AAGGTCATGT
1261ACGTAGAAGG GACTGCAGTT GTGATGGGTT TTGAAGATCC CATGCTACAG ACAGATGACA
1321CTCCTATTAA ACGCTGTCTG CAAACCAAAT GGCCATACAT TGAGTTACTC TGGACCACAG
1381ATCGCTCTCC TTCACTAAAT TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1441attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)