Construct: ORF ccsbBroadEn_04235
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001180.1_s300c1, BRDN0000392970
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TDRD3 (81550)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 81550 | TDRD3 | tudor domain containing 3 | NM_001146071.1 | 100% | 100% | |
| 2 | human | 81550 | TDRD3 | tudor domain containing 3 | NM_030794.2 | 100% | 100% | |
| 3 | human | 81550 | TDRD3 | tudor domain containing 3 | XM_024449418.1 | 100% | 100% | |
| 4 | human | 81550 | TDRD3 | tudor domain containing 3 | XM_024449419.1 | 100% | 100% | |
| 5 | human | 81550 | TDRD3 | tudor domain containing 3 | XM_024449416.1 | 91% | 85.9% | 1837_1988del;2106_2145del |
| 6 | human | 81550 | TDRD3 | tudor domain containing 3 | XM_005266560.2 | 90.9% | 85.8% | 1837_1988del;2106_2148del |
| 7 | human | 81550 | TDRD3 | tudor domain containing 3 | XM_024449417.1 | 90.9% | 85.8% | 1837_1988del;2106_2148del |
| 8 | human | 81550 | TDRD3 | tudor domain containing 3 | NM_001146070.2 | 87.5% | 87.5% | 1_279del |
| 9 | human | 81550 | TDRD3 | tudor domain containing 3 | XM_017020777.1 | 87.5% | 87.5% | 1_279del |
| 10 | human | 81550 | TDRD3 | tudor domain containing 3 | XR_002957476.1 | 81.9% | 1_68del;1905_1991del;2109_2384del | |
| 11 | human | 81550 | TDRD3 | tudor domain containing 3 | XR_002957475.1 | 81.8% | 1_68del;1905_1991del;2109_2387del | |
| 12 | human | 81550 | TDRD3 | tudor domain containing 3 | XM_005266556.4 | 80.4% | 76% | 1_279del;2116_2267del;2385_2427del |
| 13 | mouse | 219249 | Tdrd3 | tudor domain containing 3 | XM_006518910.3 | 85% | 84.1% | (many diffs) |
| 14 | mouse | 219249 | Tdrd3 | tudor domain containing 3 | XM_006518911.3 | 85% | 84.1% | (many diffs) |
| 15 | mouse | 219249 | Tdrd3 | tudor domain containing 3 | XM_006518912.3 | 85% | 84.1% | (many diffs) |
| 16 | mouse | 219249 | Tdrd3 | tudor domain containing 3 | XM_006518909.2 | 76.7% | 75.9% | (many diffs) |
| 17 | mouse | 219249 | Tdrd3 | tudor domain containing 3 | NM_172605.3 | 74.4% | 73.6% | (many diffs) |
| 18 | mouse | 219249 | Tdrd3 | tudor domain containing 3 | NM_001253755.1 | 70.7% | 69% | (many diffs) |
| 19 | mouse | 219249 | Tdrd3 | tudor domain containing 3 | XM_011245039.1 | 70.7% | 68.6% | (many diffs) |
| 20 | mouse | 219249 | Tdrd3 | tudor domain containing 3 | XR_383170.2 | 59.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2019
- ORF length:
- 1953
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GCGATTACAG ATGACTGATG GTCATATAAG TTGCACAGCA GTAGAATTTA 121 GTTATATGTC AAAAATAAGC CTGAACACAC CACCTGGAAC TAAAGTTAAG CTCTCAGGCA 181 TTGTTGACAT AAAAAATGGA TTCCTGCTCT TGAATGACTC TAACACCACA GTTCTTGGTG 241 GTGAAGTGGA ACACCTTATT GAGAAATGGG AGTTACAGAG AAGCTTATCA AAACACAATA 301 GAAGCAATAT TGGAACTGAA GGTGGACCAC CGCCTTTTGT GCCTTTTGGA CAGAAGTGTG 361 TATCTCATGT CCAAGTGGAT AGCAGAGAAC TTGATCGAAG AAAAACATTG CAAGTTACAA 421 TGCCTGTCAA ACCTACAAAT GATAATGATG AATTTGAAAA GCAAAGGACG GCTGCTATTG 481 CTGAAGTTGC AAAGAGCAAG GAAACCAAGA CATTTGGAGG AGGTGGTGGT GGTGCTAGAA 541 GTAATCTCAA TATGAATGCT GCTGGTAACC GAAATAGGGA AGTTTTACAG AAAGAAAAGT 601 CAACCAAATC AGAGGGAAAA CATGAAGGTG TCTATAGAGA ACTGGTTGAT GAGAAAGCTC 661 TGAAGCACAT AACGGAAATG GGCTTCAGTA AGGAAGCATC GAGGCAAGCT CTTATGGATA 721 ATGGCAACAA CTTAGAAGCA GCACTGAACG TACTTCTTAC AAGCAATAAA CAGAAACCTG 781 TTATGGGTCC TCCTCTGAGA GGTAGAGGAA AAGGCAGGGG GCGAATAAGA TCTGAAGATG 841 AAGAGGACCT GGGAAATGCA AGGCCATCAG CACCAAGCAC ATTATTTGAT TTCTTGGAAT 901 CTAAAATGGG AACTTTGAAT GTGGAAGAAC CTAAATCACA GCCACAGCAG CTTCATCAGG 961 GACAATACAG ATCATCAAAT ACTGAGCAAA ATGGAGTAAA AGATAATAAT CATCTGAGAC 1021 ATCCTCCTCG AAATGATACC AGGCAGCCAA GAAATGAAAA ACCGCCTCGT TTTCAAAGAG 1081 ACTCCCAAAA TTCAAAGTCA GTTTTAGAAG GCAGTGGATT ACCTAGAAAT AGAGGTTCTG 1141 AAAGACCAAG TACTTCTTCA GTATCTGAAG TATGGGCTGA AGACAGAATC AAATGTGATA 1201 GACCGTATTC TAGATATGAC AGAACTAAAG ATACTTCATA TCCTTTAGGT TCTCAGCATA 1261 GTGATGGTGC TTTTAAAAAA AGAGATAACT CTATGCAAAG CAGATCAGGA AAAGGTCCCT 1321 CCTTTGCAGA GGCAAAAGAA AATCCACTTC CTCAAGGATC TGTAGATTAT AATAATCAAA 1381 AACGTGGAAA AAGAGAAAGC CAAACATCTA TTCCTGATTA TTTTTATGAC AGGAAATCAC 1441 AAACAATAAA TAATGAAGCT TTCAGTGGTA TAAAAATTGA AAAACATTTT AATGTAAATA 1501 CTGATTATCA GAATCCAGTT CGAAGTAATA GTTTCATTGG TGTTCCAAAT GGAGAAGTAG 1561 AAATGCCACT GAAAGGAAGA CGAATAGGAC CTATTAAGCC AGCAGGACCT GTCACAGCTG 1621 TACCCTGTGA TGATAAAATA TTTTACAATA GTGGGCCCAA ACGAAGATCT GGGCCAATTA 1681 AGCCAGAAAA AATACTAGAA TCATCTATTC CTATGGAGTA TGCAAAAATG TGGAAACCTG 1741 GAGATGAATG TTTTGCACTT TATTGGGAAG ACAACAAGTT TTACCGGGCA GAAGTTGAAG 1801 CCCTCCATTC TTCGGGTATG ACAGCAGTTG TTAAATTCAT TGACTACGGA AACTATGAAG 1861 AGGTGCTACT GAGCAATATC AAGCCCATTC AAACAGAGGC ATGGGAGGAA GAAGGCACCT 1921 ACGATCAAAC TCTGGAGTTC CGTAGGGGAG GTGATGGCCA GCCAAGACGA TCCACTCGGC 1981 CAACCCAACA GTTTTACCAA CCACCCCGGG CTCGGAACTA CCCAACTTTC TTGTACAAAG 2041 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac