Construct: ORF ccsbBroadEn_04417

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007946.1_s300c1, BRDN0000456979
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GPT2 (84706)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84706 GPT2 glutamic--pyruvic transamin... NM_133443.4 100% 100%
2 human 84706 GPT2 glutamic--pyruvic transamin... NM_001142466.3 80.8% 80.8% 0_1ins300
3 human 84706 GPT2 glutamic--pyruvic transamin... XM_017023790.1 72.4% 71.8% (many diffs)
4 mouse 108682 Gpt2 glutamic pyruvate transamin... NM_173866.3 88.4% 92.9% (many diffs)
5 mouse 108682 Gpt2 glutamic pyruvate transamin... XM_006530559.2 48.2% 45.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1638
ORF length:
1569
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCAGCGGGCG GCGGCGCTGG TCCGGCGGGG CTGTGGTCCC CGGACCCCCA
121GCTCCTGGGG CCGCAGCCAG AGCAGCGCGG CCGCCGAGGC CTCGGCGGTG CTCAAGGTGC
181GGCCCGAGCG CAGCCGGCGC GAGCGCATCC TCACGCTGGA GTCCATGAAC CCGCAGGTGA
241AGGCGGTGGA GTACGCCGTG CGGGGACCCA TCGTGCTCAA GGCCGGCGAG ATCGAGCTCG
301AGCTGCAGCG GGGTATCAAA AAGCCATTCA CAGAGGTCAT CCGAGCCAAC ATCGGGGACG
361CCCAGGCTAT GGGGCAGCAG CCAATCACCT TCCTCCGGCA GGTGATGGCA CTATGCACCT
421ACCCAAACCT GCTGGACAGC CCCAGCTTCC CAGAAGATGC TAAGAAACGT GCCCGGCGGA
481TCCTGCAGGC TTGTGGCGGG AACAGCCTGG GGTCCTACAG TGCTAGCCAG GGTGTCAACT
541GCATCCGTGA AGATGTGGCT GCCTACATCA CCAGGAGGGA TGGCGGTGTG CCTGCGGACC
601CCGACAACAT CTACCTGACC ACGGGAGCTA GTGACGGCAT TTCTACGATC CTGAAGATCC
661TCGTCTCCGG GGGCGGCAAG TCACGGACAG GTGTGATGAT CCCCATCCCA CAATATCCCC
721TCTATTCAGC TGTCATCTCT GAGCTCGACG CCATCCAGGT GAATTACTAC CTGGACGAGG
781AGAACTGCTG GGCGCTGAAT GTGAATGAGC TCCGGCGGGC GGTGCAGGAG GCCAAAGACC
841ACTGTGATCC TAAGGTGCTC TGCATAATCA ACCCTGGGAA CCCCACAGGC CAGGTACAAA
901GCAGAAAGTG CATAGAAGAT GTGATCCACT TTGCCTGGGA AGAGAAGCTC TTTCTCCTGG
961CTGATGAGGT GTACCAGGAC AACGTGTACT CTCCAGATTG CAGATTCCAC TCCTTCAAGA
1021AGGTGCTGTA CGAGATGGGG CCCGAGTACT CCAGCAACGT GGAGCTCGCC TCCTTCCACT
1081CCACCTCCAA GGGCTACATG GGCGAGTGTG GTTACAGAGG AGGCTACATG GAGGTGATCA
1141ACCTGCACCC TGAGATCAAG GGCCAGCTGG TGAAGCTGCT GTCGGTGCGC CTGTGCCCCC
1201CAGTGTCTGG GCAGGCCGCC ATGGACATTG TCGTGAACCC CCCGGTGGCA GGAGAGGAGT
1261CCTTTGAGCA ATTCAGCCGA GAGAAGGAGT CGGTCCTGGG TAATCTGGCC AAAAAAGCAA
1321AGCTGACGGA AGACCTGTTT AACCAAGTCC CAGGAATTCA CTGCAACCCC TTGCAGGGGG
1381CCATGTACGC CTTCCCTCGG ATCTTCATTC CTGCCAAAGC TGTGGAGGCT GCTCAGGCCC
1441ATCAAATGGC TCCAGACATG TTCTACTGCA TGAAGCTCCT GGAGGAGACT GGCATCTGTG
1501TCGTGCCCGG CAGTGGCTTT GGGCAGAGGG AAGGCACTTA CCACTTCAGG ATGACTATCC
1561TCCCTCCAGT GGAGAAGCTG AAAACGGTGC TGCAGAAGGT GAAAGACTTC CACATCAACT
1621TCCTGGAGAA GTACGCGTTG CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt
1681gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

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