Construct: ORF ccsbBroadEn_04470

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008612.1_s300c1, BRDN0000394594
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMEM241 (85019)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 85019 TMEM241 transmembrane protein 241 NM_032933.6 100% 100%
2 human 85019 TMEM241 transmembrane protein 241 XM_017026045.1 91.2% 91.2% 278_279ins78
3 human 85019 TMEM241 transmembrane protein 241 XM_011526233.2 89.6% 89.6% 763_864del
4 human 85019 TMEM241 transmembrane protein 241 XM_017026043.1 82.4% 79.9% (many diffs)
5 human 85019 TMEM241 transmembrane protein 241 XM_017026044.2 82.2% 79.7% (many diffs)
6 human 85019 TMEM241 transmembrane protein 241 XR_935259.1 62.6% (many diffs)
7 human 85019 TMEM241 transmembrane protein 241 XR_935260.1 60.7% (many diffs)
8 human 85019 TMEM241 transmembrane protein 241 NM_001318834.1 58.6% 57% (many diffs)
9 human 85019 TMEM241 transmembrane protein 241 XM_017026049.1 58.6% 57% (many diffs)
10 human 85019 TMEM241 transmembrane protein 241 XM_017026050.1 58.6% 57% (many diffs)
11 human 85019 TMEM241 transmembrane protein 241 XM_017026051.1 58.6% 57% (many diffs)
12 human 85019 TMEM241 transmembrane protein 241 XM_017026046.1 47.8% 44% (many diffs)
13 human 85019 TMEM241 transmembrane protein 241 XM_017026047.1 47.8% 44% (many diffs)
14 human 85019 TMEM241 transmembrane protein 241 XM_024451277.1 47.8% 44% (many diffs)
15 human 85019 TMEM241 transmembrane protein 241 XR_001753294.1 40.4% (many diffs)
16 human 85019 TMEM241 transmembrane protein 241 NR_148383.1 27.8% 1_117del;188_189ins47;959_2977del
17 human 85019 TMEM241 transmembrane protein 241 NR_134877.1 27.7% 1_117del;599_600ins46;960_2992del
18 human 85019 TMEM241 transmembrane protein 241 NR_134875.1 27.6% 1_117del;550_551ins49;957_2989del
19 human 85019 TMEM241 transmembrane protein 241 NR_148385.1 26.6% 1_117del;313_314ins82;924_2942del
20 human 85019 TMEM241 transmembrane protein 241 NR_148384.1 26.1% (many diffs)
21 human 85019 TMEM241 transmembrane protein 241 NR_148382.1 25.2% 1_117del;185_186ins125;881_2899del
22 human 85019 TMEM241 transmembrane protein 241 XR_001753289.1 22.3% 1_107del;996_3972del
23 human 85019 TMEM241 transmembrane protein 241 XR_001753288.1 15.9% 1_107del;996_5552del
24 human 85019 TMEM241 transmembrane protein 241 XR_001753292.2 15.6% 1_100del;482_596del;1104_5660del
25 human 85019 TMEM241 transmembrane protein 241 XR_001753287.1 15.3% 1_107del;872_1011del;1136_5773del
26 human 85019 TMEM241 transmembrane protein 241 XR_001753293.1 14.8% (many diffs)
27 human 85019 TMEM241 transmembrane protein 241 XR_001753290.2 13.6% (many diffs)
28 human 85019 TMEM241 transmembrane protein 241 XR_001753291.1 12.8% 1_107del;539_540ins166;830_5467del
29 mouse 338363 Tmem241 transmembrane protein 241 NM_001289666.1 85.8% 81.8% (many diffs)
30 mouse 338363 Tmem241 transmembrane protein 241 NM_178801.5 81.5% 76.7% (many diffs)
31 mouse 338363 Tmem241 transmembrane protein 241 XM_006526053.3 73.4% 70% (many diffs)
32 mouse 338363 Tmem241 transmembrane protein 241 XM_006526056.3 69.8% 65.7% (many diffs)
33 mouse 338363 Tmem241 transmembrane protein 241 XM_006526057.3 68.6% 61.3% (many diffs)
34 mouse 338363 Tmem241 transmembrane protein 241 XM_006526054.3 67.1% 60.4% (many diffs)
35 mouse 338363 Tmem241 transmembrane protein 241 XM_006526059.3 65.4% 62.1% (many diffs)
36 mouse 338363 Tmem241 transmembrane protein 241 XR_385999.3 57.3% (many diffs)
37 mouse 338363 Tmem241 transmembrane protein 241 XM_006526062.3 57.1% 54.9% (many diffs)
38 mouse 338363 Tmem241 transmembrane protein 241 XR_386003.3 56.3% (many diffs)
39 mouse 338363 Tmem241 transmembrane protein 241 XR_386000.3 56% (many diffs)
40 mouse 338363 Tmem241 transmembrane protein 241 XM_011246967.2 52.6% 48.8% (many diffs)
41 mouse 338363 Tmem241 transmembrane protein 241 XM_006526063.3 50.6% 48.5% (many diffs)
42 mouse 338363 Tmem241 transmembrane protein 241 XR_877136.2 44% (many diffs)
43 mouse 338363 Tmem241 transmembrane protein 241 XM_011246969.2 35% 29.8% (many diffs)
44 mouse 338363 Tmem241 transmembrane protein 241 NR_110356.1 23.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
957
ORF length:
888
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTGCGTGAGG AGGTCTCTGG TCGGCCTCAC CTTTTGTACC TGCTACCTGG
121CTTCTTACCT CACGAACAAG TATGTGCTGT CTGTCTTGAA ATTTACCTAC CCTACATTAT
181TCCAAGGGTG GCAGACGCTC ATTGGTGGAC TTTTGCTTCA TGTGTCCTGG AAACTGGGCT
241GGGTAGAGAT CAACAGCAGT TCAAGATCTC ATGTTCTTGT GTGGCTTCCT GCTTCAGTGC
301TGTTTGTGGG TATAATCTAT GCTGGGTCCA GAGCATTGTC CAGACTGGCC ATTCCTGTGT
361TTCTCACTTT GCATAATGTA GCTGAAGTTA TCATCTGTGG GTACCAGAAG TGTTTTCAGA
421AAGAGAAAAC ATCTCCTGCA AAGATCTGTA GTGCCCTCCT CCTCCTGGCC GCAGCAGGAT
481GCCTTCCCTT CAATGACTCC CAGTTTAATC CAGATGGATA TTTTTGGGCT ATAATTCACT
541TACTCTGTGT AGGGGCTTAT AAAATTCTAC AGAAGTCCCA GAAACCCAGT GCATTAAGTG
601ACATTGACCA GCAATACTTA AACTATATAT TCAGTGTGGT GCTCCTGGCA TTTGCATCTC
661ATCCCACAGG TGATCTCTTC AGCGTCCTGG ACTTCCCATT CCTGTACTTC TACAGATTCC
721ATGGTAGCTG CTGTGCCAGT GGATTTTTGG GATTCTTTCT CATGTTCAGT ACAGTGAAGC
781TAAAAAACCT TCTGGCCCCA GGGCAGTGTG CAGCCTGGAT TTTCTTTGCT AAGATAATCA
841CAGCTGGCTT ATCAATATTG CTGTTTGATG CGATCCTGAC CAGTGCAACC ACGGGATGCC
901TCCTGCTCGG TGCGCTTGGA GAGGCCTTGC TGGTTTTCTC AGAGCGGAAG AGCTCCTTGC
961CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
1021aac

Download FASTA (ORF) (Full)