Transcript: Human XM_017026045.1

PREDICTED: Homo sapiens transmembrane protein 241 (TMEM241), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TMEM241 (85019)
Length:
5557
CDS:
110..922

Additional Resources:

NCBI RefSeq record:
XM_017026045.1
NBCI Gene record:
TMEM241 (85019)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017026045.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000428541 CATTGACCAGCAATACTTAAA pLKO_005 565 CDS 100% 13.200 18.480 N TMEM241 n/a
2 TRCN0000431382 CACAGCTGGCTTATCAATATT pLKO_005 802 CDS 100% 15.000 10.500 N TMEM241 n/a
3 TRCN0000435825 GTGCTGTTTGTGGGTATAATC pLKO_005 338 CDS 100% 13.200 9.240 N TMEM241 n/a
4 TRCN0000005414 AGACGCTCATTGGTGGACTTT pLKO.1 234 CDS 100% 4.950 3.465 N TMEM241 n/a
5 TRCN0000005413 CCGTCCTTTCTTTGCTGTCAT pLKO.1 1878 3UTR 100% 4.950 3.465 N TMEM241 n/a
6 TRCN0000005416 CCTGGCTTCTTACCTCACGAA pLKO.1 157 CDS 100% 2.640 1.848 N TMEM241 n/a
7 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 4853 3UTR 100% 13.200 6.600 Y LIAS n/a
8 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 2419 3UTR 100% 4.950 2.475 Y ORAI2 n/a
9 TRCN0000084008 CGCCTATAATCCCAGCACTTT pLKO.1 2341 3UTR 100% 4.950 2.475 Y NPHS1 n/a
10 TRCN0000149064 GCAGGTTTGTTACATAGGTAT pLKO.1 2724 3UTR 100% 4.950 2.475 Y GLIPR1L2 n/a
11 TRCN0000179120 CAACATGGTGAAACCCTGTTT pLKO.1 2416 3UTR 100% 4.950 2.475 Y LOC339059 n/a
12 TRCN0000009295 GCAGGTTTGTTACATAGGTAA pLKO.1 2724 3UTR 100% 4.950 2.475 Y OR11A1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017026045.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04470 pDONR223 100% 91.2% 91.2% None 278_279ins78 n/a
2 ccsbBroad304_04470 pLX_304 0% 91.2% 91.2% V5 278_279ins78 n/a
3 TRCN0000475022 CACGAGTAATAAGGAGATGGGGTT pLX_317 55.4% 91.2% 91.2% V5 278_279ins78 n/a
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